Commits for braney

v384_preview2 to v384_base (2019-06-24 to 2019-07-01) v384

612baf5a4599ab93d0f430c538e9fb16bc3c8d3d Mon Jun 24 13:51:05 2019 -0700

• move trackDbCache stuff to its own file. Remove dependencies on /dev/shm being the cache location.
  • src/hg/inc/trackDb.h - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/trackDbCache.c - lines changed 377, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 355, context: html, text, full: html, text

cfbb26ac44e486b02c92c76f4343edd44a12540c Wed Jun 26 09:56:24 2019 -0700

• add an upstream gene table for hg38
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/ignore.idx - lines changed 5, context: html, text, full: html, text

3ef1589ee01ec67a7cfd1ddfb050f606c3a03ccb Thu Jun 27 11:23:38 2019 -0700

• make sure bigBed gets closed even if it's asked for an index it doesn't have
  • src/hg/lib/bigBedFind.c - lines changed 5, context: html, text, full: html, text

a83ffcfa578d5bf9b585582787c46ed9d9ddab9c Fri Jun 28 16:45:47 2019 -0700

• put some information in the error log if new custom tracks are added so we can do a better job of tracking who is doing it.
  • src/hg/lib/customTrack.c - lines changed 9, context: html, text, full: html, text