Commits for galt

v383_base to v384_preview (2019-06-10 to 2019-06-17) v384

88397e74fca8a32b42529c845505cda5cbc43512 Mon Jun 10 14:31:49 2019 -0700

• Shifting Analysis->Query to Metadata Query as its CGI top-level menu item as requested. refs #23384.
  • src/hg/cirm/cdw/lib/cdwNavBar.h - lines changed 2, context: html, text, full: html, text

6827eaab28004c74be351b4bcb4316264dc42b89 Wed Jun 12 01:41:12 2019 -0700

• Small html errors found by htmlCheck
  • src/hg/makeDb/trackDb/bacteria/staAur2/cons369way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/birds/geoFor1/cons7way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal4/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal6/cons77way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chinchilla/chiLan1/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/criGri/criGriChoV1/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFamPoodle1/gap.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/bdtnpChipper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/bdtnpChipperOld.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/chainDm2.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm6/cons124way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm6/cons27way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dp3/flyBaseGene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/fr1/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gibbon/nomLeu3/description.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/h1n1/h1n1/h1n1Gene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/h1n1/h1n1/humanHA.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/h1n1/h1n1/swineHA.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/vax003PosSel.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/vax004PosSelLoc.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/vax004PosSelRace.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/vax004PosSelVac.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg12/blastzBestMouse.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg12/rnaGene.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg12/slamMouse.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg12/slamNonCodingMouse.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg12/slamNonCodingRat.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/humMusL.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/humanNet.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/slamMouse.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/slamNonCodingMouse.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/slamNonCodingRat.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/slamRat.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg15/hg15Mm3L.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg15/humanNet.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/chimpDels.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/hapmapLd.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/blastzBestRn3.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/human/hg17/blastzTightMm4.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeGisChipPetAll.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeNhgriDnaseHsChipRaw.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeSangerChip.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeSangerChipJan07.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeUWRegulomeBase.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeYaleChipPval.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeYaleChipSig.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeYaleChipSignal.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/exonWalk.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/genomeVar.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/hapmapLd.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/hars.html - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/rertyHumanDiversityLd.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/sangamoDnaseHs.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/cnpRedon.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeSangerChip.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUWRegulomeBase.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipPval.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSig.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/hapmapLd.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/hars.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/mammalPsg.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/pgSnp.html - lines changed 45, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/pgSnpHgwdev.html - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/snpArrayBeta.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/snpArrayWith1M.html - lines changed 1, context: html, text, full: html, text

93355a504a563b0e365231e32a3f71174e2b3884 Wed Jun 12 01:48:55 2019 -0700

• Increase background timeout wait. Genome-euro machine is not as fast. refs #23628.
  • src/hg/hgSession/backup.c - lines changed 2, context: html, text, full: html, text

3b2f2b6a075942048a3acac89af44e332a326b7b Thu Jun 13 16:23:19 2019 -0700

• Enable > 4GB uploads by increasing maximium size of dyString to long (64 bits size) instead of int (32 bits size). This limit was impeding uploads artificially at 4GB.
  • src/hg/encode3/encodeDataWarehouse/edwScriptSubmitStatus/edwScriptSubmitStatus.c - lines changed 1, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwWebAuthLogin/edwWebAuthLogin.c - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c - lines changed 3, context: html, text, full: html, text
  • src/inc/dystring.h - lines changed 6, context: html, text, full: html, text
  • src/lib/dystring.c - lines changed 15, context: html, text, full: html, text
  • src/lib/tests/dyStringTester.c - lines changed 1, context: html, text, full: html, text