Commits for angie

v385_preview to v385_preview2 (2019-07-08 to 2019-07-15) v385

46dc535d3f532f80ada63859bc948ad4af0a72d3 Mon Jul 8 10:27:37 2019 -0700

• Rewrote bedJoinTabOffset in C to handle very large files. Renamed script to bedJoinTabOffset.py . refs #23283 The new C version does not yet support any of the script's command line options.
  • src/utils/bedJoinTabOffset - lines changed 114, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset.py - lines changed 114, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset/bedJoinTabOffset.c - lines changed 134, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset/makefile - lines changed 3, context: html, text, full: html, text
  • src/utils/makefile - lines changed 2, context: html, text, full: html, text

26dfab729803a710418a1d9af7b6c14ceeb2a5de Wed Jul 10 15:30:14 2019 -0700

• Fixing buffer overflow: mm10, ccdsGene, CCDS25925.1. no redmine
  • src/hg/hgc/hgc.c - lines changed 1, context: html, text, full: html, text

15fca87535d94ba45c37c8088ffb571dcb024b9e Mon Jul 8 10:31:31 2019 -0700

• Increasing hashMaxSize to 30 to support dbSNP's 650M+ rs IDs. Replaced assert with more informative error message when too-large size is passed in. refs #23283
  • src/inc/hash.h - lines changed 1, context: html, text, full: html, text
  • src/lib/hash.c - lines changed 21, context: html, text, full: html, text