Commits for hiram

v386_preview2 to v386_base (2019-08-05 to 2019-08-12) v386

06f2e5b1d44ec0f161e534274c848b6b32fa0200 Mon Aug 5 15:53:52 2019 -0700

• working up a gene density profile to find default position refs #23734
  • src/hg/makeDb/doc/VGP/bigDensity.pl - lines changed 99, context: html, text, full: html, text

2c720ad5f45b1111583f17a95b58cc9750f4c5c5 Tue Aug 6 09:44:15 2019 -0700

• fixup links to hgdownload for AGP and JPG image refs #23734
  • src/hg/utils/automation/asmHubGatewayPage.pl - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 13, context: html, text, full: html, text

19eac373dbe1f4905c05238efc78f5becd8a31fc Thu Aug 8 10:55:14 2019 -0700

• beginning of xenoRefGene track construction refs #23734
  • src/hg/utils/automation/doXenoRefGene.pl - lines changed 405, context: html, text, full: html, text

bffb0697d62c7c19251d617ecd0233995921afb4 Thu Aug 8 21:30:15 2019 -0700

• a little bit quick and dirty but might be good enough for now refs #23734
  • src/hg/utils/automation/doXenoRefGene.pl - lines changed 79, context: html, text, full: html, text

565a1be447a21c7cc142eb1aa6571387aecd3b37 Thu Aug 8 21:31:28 2019 -0700

• adding doXenoRefGene procedure refs #23734
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 44, context: html, text, full: html, text

a6931e479d3f8415a57fb979b759537cbc6e0ab0 Thu Aug 8 22:16:57 2019 -0700

• xenoRefGene ready to go refs #23734
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 28, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubXenoRefGene.pl - lines changed 83, context: html, text, full: html, text
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 3, context: html, text, full: html, text

961c4bf5416b5f1282caf6200c94ce97c616e329 Thu Aug 8 23:11:57 2019 -0700

• correctly add index to xenoRefGene refs #23734
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/automation/doXenoRefGene.pl - lines changed 1, context: html, text, full: html, text

d323472f6693dec4cfd0533838563fc6bcdf25f2 Fri Aug 9 17:52:50 2019 -0700

• xenoRefGene description page fixed up and custom .as definition for the track and correct labelFields on xenoRefGene and ncbiGene refs #23734
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubXenoRefGene.pl - lines changed 72, context: html, text, full: html, text
  • src/hg/utils/automation/doXenoRefGene.pl - lines changed 3, context: html, text, full: html, text

105fec5755610c9d34105977e6b87a5ed248540e Mon Aug 12 10:01:08 2019 -0700

• v386 final build, refs #23928
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

4f42ac5eef7748338089fb2fa2621569bdc9f029 Mon Aug 12 10:03:08 2019 -0700

• New version number v386
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
  • src/inc/srcVersion.h - lines changed 1, context: html, text, full: html, text