Commits for angie

v389_preview2 to v389_base (2019-10-07 to 2019-10-14) v389

fbd7a94213923088270a2bc3da63d0b8139451f0 Thu Oct 10 14:33:52 2019 -0700

• LRG now distinguishes between fix_patch and novel_patch in their XML, so we can include mappings to fix & alt patch sequences. Overdue for an update anyway. refs #24285
  • src/hg/makeDb/doc/hg19.txt - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/utils/automation/parseLrgXml.pl - lines changed 2, context: html, text, full: html, text

e25660cfe3e40f77688852171a4868c0784afa69 Fri Oct 11 12:56:01 2019 -0700

• Fixing error in assembly hub composite track search; also, don't default to bigBed name index unless a searchSpec (hfs) is given. refs #24238
  • src/hg/lib/bigBedFind.c - lines changed 27, context: html, text, full: html, text