File Changes for angie

v390_preview2 to v390_base (2019-10-28 to 2019-11-04) v390

• src/hg/hgc/bigDbSnpClick.c
  • lines changed 4, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
• src/hg/htdocs/style/HGStyle.css
  • lines changed 1, context: html, text, full: html, text
    ab8c75c06bffbecea6bda11535beaad614bcd494 Mon Oct 28 14:09:51 2019 -0700
    table.subtracks needs white-space:nowrap, but its normal table descendants do not; set back to normal. refs #23283 note-72
• src/hg/inc/bigDbSnp.h
  • lines changed 5, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
• src/hg/lib/bigDbSnp.c
  • lines changed 12, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
  • lines changed 1, context: html, text, full: html, text
    b23bfd1da3c9926158cd96b7f73bf6b889c3d424 Thu Oct 31 14:06:35 2019 -0700
    Minor wording tweak, refs #23283
• src/hg/lib/hui.c
  • lines changed 15, context: html, text, full: html, text
    db1681c559128800c65ce174dc010343e6ea38d2 Thu Oct 31 13:45:12 2019 -0700
    bigDbSnp freqSource dropdown: clarify that 'GnomAD' is GnomAD genomes, thx Ana. refs #23283
• src/hg/makeDb/doc/bigDbSnp.txt
  • lines changed 27, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
• src/hg/makeDb/trackDb/human/dbSnp153Composite.html
  • lines changed 36, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
  • lines changed 3, context: html, text, full: html, text
    b23bfd1da3c9926158cd96b7f73bf6b889c3d424 Thu Oct 31 14:06:35 2019 -0700
    Minor wording tweak, refs #23283
  • lines changed 16, context: html, text, full: html, text
    98407c7ac7f8fda3aec01535e17b92e3a5de8177 Fri Nov 1 14:53:38 2019 -0700
    Improving upon dbSNP's uneven descriptions of frequency-submitting projects. refs #23283
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    77a05dfd9799bd98b69d9d3f1604b19d8e3591b5 Fri Nov 1 14:59:11 2019 -0700
    typo fix: 152 -> 153, refs #23283
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
  • lines changed 1, context: html, text, full: html, text
    0d4a91ffec51c95e9e509b528f553d0bdb1adad8 Thu Oct 31 14:12:33 2019 -0700
    dbSnp153: oops, forgot to add rareAll and rareSome to ucscNotesFilterValues. refs #23283
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    7330f07979130a5814186c51c0ed2ab036f9edaa Fri Nov 1 13:30:03 2019 -0700
    Tweak ucscNotes filter labels. refs #23283
  • lines changed 24, context: html, text, full: html, text
    40d29e81f3b815d0fbb56dd628a1c653933d3b3b Fri Nov 1 13:53:50 2019 -0700
    Added search specs for dbSnp153{Common,ClinVar,Mult} subset tracks. refs #23283
• src/hg/snp/dbSnpJsonToTab/dbSnpJsonToTab.c
  • lines changed 42, context: html, text, full: html, text
    acca3deffc05c4d8d11590a1cf3d893763254712 Thu Oct 31 13:43:05 2019 -0700
    dbSnp153: Adding new ucscNotes suggested by Ana Benet: clinvar{Benign,Conflicting,Pathogenic}, rareAll, rareSome. refs #23283
  • lines changed 8, context: html, text, full: html, text
    19da7bcf56ec86a80554a364d191d31b00d95f3e Fri Nov 1 13:51:49 2019 -0700
    dbSnpJsonToTab was including refIsMinor multiple times for same variant - fixed. refs #23283
• src/hg/utils/automation/categorizeBigDbSnp.pl
  • lines changed 80, context: html, text, full: html, text
    ab911e338fecf626957f119d86bea1075ec0bcfd Fri Nov 1 14:11:47 2019 -0700
    Oops, forgot to commit categorizeBigDbSnp.pl along with doBigDbSnp.pl when adding subset tracks. refs #23283