Commits for kate

v390_base to v391_preview (2019-11-04 to 2019-11-11) v391

4694cf962a5317db178ee853bb955305b914a630 Mon Nov 4 12:18:02 2019 -0800

• Defer adding hideEmptySubtracks to Mouse Histones track. refs #23365
  • src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra - lines changed 3, context: html, text, full: html, text

2e2155ca3de501f17408b1cb11ff074a3ccb4b2c Tue Nov 5 12:03:43 2019 -0800

• Add gnomAD variants for hg38. refs #21782
  • src/hg/makeDb/doc/hg38/gnomad.txt - lines changed 27, context: html, text, full: html, text

8abcf1db290578d553d43cf559bf6b987681442b Tue Nov 5 17:26:04 2019 -0800

• Polish track configurations and descriptions. refs #23888
  • src/hg/makeDb/doc/epdNew.txt - lines changed 51, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/epdNewPromoter.html - lines changed 80, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 34, context: html, text, full: html, text

849a921db0a5f5e89040171e9da31fc63d2aef0d Tue Nov 5 17:28:14 2019 -0800

• Minor edit. refs #23888
  • src/hg/makeDb/trackDb/epdNewPromoter.html - lines changed 1, context: html, text, full: html, text

7fc67f7c0d409822a83b94113bea02abeef2b569 Wed Nov 6 08:21:02 2019 -0800

• Remove problematic and unnecessary release tags. refs #23888
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text

ca0956d5875613b43a613fec972e069e2b45ab30 Wed Nov 6 08:57:43 2019 -0800

• Add build scripts to source control. refs #23880
  • src/hg/makeDb/doc/encode3/mouse.txt - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/outside/encode3/mouse/README.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/outside/encode3/mouse/makeChromHmmTrackDb.pl - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/outside/encode3/mouse/makeInteract.pl - lines changed 255, context: html, text, full: html, text
  • src/hg/makeDb/outside/encode3/mouse/mergeInteractReps.pl - lines changed 62, context: html, text, full: html, text

6befb4068d107f7646a74747afa24adc47ebac43 Wed Nov 6 10:32:07 2019 -0800

• Polish track labels and colors. refs #23881
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.ra - lines changed 13, context: html, text, full: html, text

8f288a664a2b8c73a3a5cbf0507905f89ff17e05 Wed Nov 6 11:05:03 2019 -0800

• Cleanup make doc. refs #23881
  • src/hg/makeDb/doc/encode3/mouse.txt - lines changed 109, context: html, text, full: html, text

36d1da99ada6f8f121c02b750c738d8d9cf3cc61 Wed Nov 6 15:12:49 2019 -0800

• Expand and polish track description. refs #23881
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.html - lines changed 32, context: html, text, full: html, text

011938a47976ffaa251f09892e18f975a88aa2fb Wed Nov 6 15:13:32 2019 -0800

• Expand and polish track description. refs #23881
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.ra - lines changed 1, context: html, text, full: html, text

5aedf5cc144d7a928ed8de617f63ba256cd25f82 Wed Nov 6 15:50:21 2019 -0800

• More description polishing. refs #23381
  • src/hg/makeDb/trackDb/mouse/mm10/encode3RenEnhancerGene.html - lines changed 10, context: html, text, full: html, text

25b689184439ed910a6804062466c7ce30495646 Wed Nov 6 15:51:52 2019 -0800

• More methods overview -- very brief summary of pipeline docs. refs #23888
  • src/hg/makeDb/trackDb/epdNewPromoter.html - lines changed 8, context: html, text, full: html, text