Commits for chmalee

v393_preview to v393_preview2 (2020-01-13 to 2020-01-20) v393

7353e83b805581aea0cb795f682ad989785a52c1 Mon Jan 13 14:44:33 2020 -0800

• Turning the dgvMerged and Supporting tables into bigBeds with a size field so trackDb filter fields can be added, refs #24749
  • src/hg/makeDb/doc/hg19.txt - lines changed 42, context: html, text, full: html, text

7bc293b1b3c4e1e1536fa921cab42006899e740a Tue Jan 14 14:06:50 2020 -0800

• Adding filters to dgv track on hg19, refs #24749
  • src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text

b6acb5dd3f5fdafad0ae7cfda25f60047823d842 Tue Jan 14 15:28:20 2020 -0800

• add _size field to hg38 dgv for filtering, refs #24749
  • src/hg/makeDb/doc/hg38/variation.txt - lines changed 14, context: html, text, full: html, text

cd4922328b3016ff939d0ae356f5b7a917513731 Wed Jan 15 13:27:05 2020 -0800

• Moving dgvGold track definition to the other hg19 dgvGold overrides, refs #24749
  • src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 14, context: html, text, full: html, text

3c2ea00993738a6899690663f6cdfd559139eced Wed Jan 15 14:05:01 2020 -0800

• Moving gnomad Missense Constraint track into pli composite, refs #24751
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra - lines changed 8, context: html, text, full: html, text

0f4667da863293da78301c7341e6d14151b6458e Wed Jan 15 14:36:30 2020 -0800

• Forgot makedoc for missense constraint track and new util for converting between amino acid ranges and genomic positions, refs #24751
  • src/hg/makeDb/doc/hg19.txt - lines changed 79, context: html, text, full: html, text
  • src/hg/utils/aaToGenomic.py - lines changed 335, context: html, text, full: html, text

de2c47dedae1ebeb49de836beddb9bc6b4ca0ce0 Thu Jan 16 09:20:22 2020 -0800

• Moving gnomad scripts to their own directory under makeDb after Max email
  • src/hg/makeDb/gnomad/README - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/gnomad/aaToGenomic.py - lines changed 335, context: html, text, full: html, text
  • src/hg/utils/aaToGenomic.py - lines changed 335, context: html, text, full: html, text

f0026f13ab0b15e4eff7093bcc7ee31e1c34770c Thu Jan 16 10:02:12 2020 -0800

• Last gnomAD related scripts to add
  • src/hg/makeDb/gnomad/combine.awk - lines changed 80, context: html, text, full: html, text
  • src/hg/makeDb/gnomad/trimUtrs.py - lines changed 212, context: html, text, full: html, text

18af2bb33abcd036c8cd8539580a8943ce8cb8ad Fri Jan 17 08:44:45 2020 -0800

• Add full path to gnomad related track building scripts, from Max email
  • src/hg/makeDb/doc/hg19.txt - lines changed 4, context: html, text, full: html, text