File Changes for hiram

v393_preview to v393_preview2 (2020-01-13 to 2020-01-20) v393

• src/hg/makeDb/trackDb/human/hg38/rmskTracks.ra
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    f7ca8682f63ea274285629b6a0ca5c96e0be92db Fri Jan 17 11:50:59 2020 -0800
    add rmskHmmer updated 2020 track no redmine
• src/hg/utils/automation/asmHubGap.pl
  • lines changed 2, context: html, text, full: html, text
    4bd23630e7a8c9a909c69900c8b67b992a993e91 Mon Jan 13 13:15:52 2020 -0800
    two new categories of gap types to count, repeat and contamination refs #24748
• src/hg/utils/automation/asmHubNcbiRefSeq.pl
  • lines changed 129, context: html, text, full: html, text
    608fb8b82f76fc54c4189815cad4ce27bf57b5a0 Mon Jan 13 13:16:53 2020 -0800
    now running up NCBI RefSeq track on assembly hubs refs #24748
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    940dbe5d9aa8d7d58f364d2e152324f2ec4ec331 Tue Jan 14 11:38:33 2020 -0800
    now running up ncbiRefSeq gene tracks refs #24748
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    1cf2d7c2d88b736e4d18e1bff47f16c270470ee1 Tue Jan 14 13:19:13 2020 -0800
    now have working dataVersion string in the track details page refs #24748
• src/hg/utils/automation/asmHubTrackDb.sh
  • lines changed 138, context: html, text, full: html, text
    bf7206d3cbaf92e2e3e29a3f1f966b1502d21b87 Mon Jan 13 13:18:31 2020 -0800
    now running up NCBI RefSeq track on assembly hubs refs #24748
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    940dbe5d9aa8d7d58f364d2e152324f2ec4ec331 Tue Jan 14 11:38:33 2020 -0800
    now running up ncbiRefSeq gene tracks refs #24748
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    1cf2d7c2d88b736e4d18e1bff47f16c270470ee1 Tue Jan 14 13:19:13 2020 -0800
    now have working dataVersion string in the track details page refs #24748
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    1e533950b173e658ea1f8704d9afca47ec703228 Tue Jan 14 13:46:50 2020 -0800
    now with select of name labels on items for all,curated and predicted refs #24748
• src/hg/utils/automation/doAssemblyHub.pl
  • lines changed 42, context: html, text, full: html, text
    940dbe5d9aa8d7d58f364d2e152324f2ec4ec331 Tue Jan 14 11:38:33 2020 -0800
    now running up ncbiRefSeq gene tracks refs #24748
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 33, context: html, text, full: html, text
    deeb37cb48db2bb239792b0ed59889eeb271b0d6 Wed Jan 8 17:10:16 2020 -0800
    do not actually need the targeSizes option get chrom.sizes from target2bit refs #23891
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    608fb8b82f76fc54c4189815cad4ce27bf57b5a0 Mon Jan 13 13:16:53 2020 -0800
    now running up NCBI RefSeq track on assembly hubs refs #24748
  • lines changed 21, context: html, text, full: html, text
    940dbe5d9aa8d7d58f364d2e152324f2ec4ec331 Tue Jan 14 11:38:33 2020 -0800
    now running up ncbiRefSeq gene tracks refs #24748