Commits for max

v399_preview2 to v399_base (2020-05-25 to 2020-06-01) v399

bf49fd6f88186b3800efd0a212296656a6e670e0 Wed May 27 02:01:28 2020 -0700

• improving hgBlat styling a little, OK'ed by Galt per email
  • src/hg/hgBlat/hgBlat.c - lines changed 8, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 26, context: html, text, full: html, text

f28d6cf170736d1374ccac80ea59943bb85e2cab Wed May 27 02:08:22 2020 -0700

• showing disease table on omim hgc page, refs #18419
  • src/hg/hgc/hgc.c - lines changed 149, context: html, text, full: html, text

7beda309214a84ca208bb6b63178978f906698df Wed May 27 03:49:16 2020 -0700

• OMIM otto update for new OMIM phenotype table, refs #18419
  • src/hg/lib/omimPhenotype.as - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/omimPhenotype.sql - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/otto/omim/buildOmimTracks.sh - lines changed 19, context: html, text, full: html, text
  • src/hg/utils/otto/omim/doOmimPhenotype.pl - lines changed 96, context: html, text, full: html, text
  • src/hg/utils/otto/omim/doOmimPhenotypeNew - lines changed 106, context: html, text, full: html, text
  • src/hg/utils/otto/omim/makefile - lines changed 2, context: html, text, full: html, text

3d375f7832e1dce0140ba088b24dc32c11650fae Wed May 27 09:31:27 2020 -0700

• adding phyloCsf tracks, no redmine yet.
  • src/hg/makeDb/trackDb/virus/wuhCor1/PhyloCSF_Raw.html - lines changed 175, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/PhyloCSF_power.html - lines changed 175, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/phylocsf.ra - lines changed 153, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 15, context: html, text, full: html, text

69aca8aee8f6cf99943256bc817f3fcf838ed507 Wed May 27 09:44:07 2020 -0700

• removing the PREFIX from omim otto makefile, refs #18419
  • src/hg/utils/otto/omim/makefile - lines changed 3, context: html, text, full: html, text

cfa97200252eecb2b8dfe20d9d65cd5afd0f3ba3 Thu May 28 02:37:57 2020 -0700

• more OMIM hgc changes, refs #18419
  • src/hg/hgc/hgc.c - lines changed 51, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 3, context: html, text, full: html, text

8931ab6b05b124503660f86d60fe34a38266d716 Fri May 29 06:53:20 2020 -0700

• OMIM: not showing phenotype table when there are no phenotypes and add more spaces, refs #18419
  • src/hg/hgc/hgc.c - lines changed 18, context: html, text, full: html, text
  • src/hg/inc/jksql.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/jksql.c - lines changed 8, context: html, text, full: html, text

69f9fe583924590fc46fb4b40e5efc54a5f03eb9 Fri May 29 07:40:09 2020 -0700

• adding a phyloCSF track from the public hub, refs #25644
  • src/hg/makeDb/trackDb/virus/wuhCor1/phylocsf.ra - lines changed 119, context: html, text, full: html, text

b9b283bb296c06bb56f478543c354de68e7c19d5 Fri May 29 07:43:23 2020 -0700

• forgot PhyloCSF docs pages, refs #25644
  • src/hg/makeDb/trackDb/virus/wuhCor1/PhyloCSF_power.html.1 - lines changed 175, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/PhyloCSF_smooth.html - lines changed 175, context: html, text, full: html, text