File Changes for chmalee

v398_base to v399_preview (2020-05-11 to 2020-05-18) v399

• src/hg/hgHubConnect/hgHubConnect.c
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    48c5bcc0735d09367f9853ebbd053aea3f94b262 Fri May 15 10:37:48 2020 -0700
    Fix bug in hub searching where a hub being down at the time we are trying to display it's search results caused a segfault, also removing remnants of hgHubConnect needing a special udcCache, which the CGI has not been using for months now, refs #25574
• src/hg/hgTables/vcf.c
  • lines changed 1, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/hgTracks/hgTracks.c
  • lines changed 7, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/hgTracks/hgTracks.h
  • lines changed 3, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/hgTracks/simpleTracks.c
  • lines changed 4, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/hgTracks/vcfTrack.c
  • lines changed 583, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/hgc/hgc.c
  • lines changed 3, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/inc/vcfUi.h
  • lines changed 11, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/lib/customFactory.c
  • lines changed 18, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/lib/trackDbCustom.c
  • lines changed 1, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/lib/vcfUi.c
  • lines changed 112, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 47, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 3, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/hg/utils/refSeqGet/tests/expected/basicListTest.gp
  • lines changed 1, context: html, text, full: html, text
    259002a92c7e2b7f01f4bbbd079790eab6a6cec2 Wed May 13 10:01:45 2020 -0700
    Fixing refSeqGet tests
• src/hg/utils/refSeqGet/tests/expected/basicListTest.meta
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    259002a92c7e2b7f01f4bbbd079790eab6a6cec2 Wed May 13 10:01:45 2020 -0700
    Fixing refSeqGet tests
• src/hg/utils/refSeqGet/tests/expected/basicListTest.psl
  • lines changed 1, context: html, text, full: html, text
    259002a92c7e2b7f01f4bbbd079790eab6a6cec2 Wed May 13 10:01:45 2020 -0700
    Fixing refSeqGet tests
• src/hg/utils/refSeqGet/tests/expected/basicListTest.rna.fa
  • lines changed 2, context: html, text, full: html, text
    259002a92c7e2b7f01f4bbbd079790eab6a6cec2 Wed May 13 10:01:45 2020 -0700
    Fixing refSeqGet tests
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.gp
  • lines changed 1, context: html, text, full: html, text
    259002a92c7e2b7f01f4bbbd079790eab6a6cec2 Wed May 13 10:01:45 2020 -0700
    Fixing refSeqGet tests
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.meta
  • lines changed 1, context: html, text, full: html, text
    259002a92c7e2b7f01f4bbbd079790eab6a6cec2 Wed May 13 10:01:45 2020 -0700
    Fixing refSeqGet tests
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.psl
  • lines changed 1, context: html, text, full: html, text
    259002a92c7e2b7f01f4bbbd079790eab6a6cec2 Wed May 13 10:01:45 2020 -0700
    Fixing refSeqGet tests
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.rna.fa
  • lines changed 2, context: html, text, full: html, text
    259002a92c7e2b7f01f4bbbd079790eab6a6cec2 Wed May 13 10:01:45 2020 -0700
    Fixing refSeqGet tests
• src/hg/utils/refSeqGet/tests/input/versioned.acc
  • lines changed 1, context: html, text, full: html, text
    259002a92c7e2b7f01f4bbbd079790eab6a6cec2 Wed May 13 10:01:45 2020 -0700
    Fixing refSeqGet tests
• src/inc/memgfx.h
  • lines changed 2, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.
• src/inc/vcf.h
  • lines changed 1, context: html, text, full: html, text
    e46073f856770bdfef4f7637eea8f9f9297aa139 Tue Nov 19 15:57:08 2019 -0800
    Initial commit of new track type vcfPhased trio. A line with ticks, one per haplotype per sample in the VCF, as specified by trackDb variables.