Commits for chmalee

v399_preview to v399_preview2 (2020-05-18 to 2020-05-25) v399

30cb0185fefa49d413bdc67d45e11cb4bbf8d5ce Tue May 19 13:48:17 2020 -0700

• Adding check to vcf parsing for number of required headers after user's custom track caused hgCustom to crash, refs #25603
  • src/lib/vcf.c - lines changed 4, context: html, text, full: html, text

79a68220c380dfebcdb6bb0133d65f9c9321ed79 Thu May 21 11:13:23 2020 -0700

• Stagin new versions of clinGen tracks, refs #25562
  • src/hg/makeDb/trackDb/human/trackDb.clinGen.ra - lines changed 56, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 3, context: html, text, full: html, text

7ae9d0e1bf12e39fc643f806d3251b6e3dca809a Thu May 21 16:54:10 2020 -0700

• Fixing error in size filter for clinGenCnv track, thanks Dan
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.clinGen.ra - lines changed 1, context: html, text, full: html, text

81a2b1c5de6905ab22bf647d4b87e1f4277a7b32 Fri May 22 15:39:36 2020 -0700

• Woops forgot alternate names for trio individuals, refs #25585
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 3, context: html, text, full: html, text

7a16880260a6d93d0616bd8a1660fde60ac0bb3b Fri May 22 16:13:56 2020 -0700

• Use cart*ClosestToHome functions for setting trackUi vars so composite level track settings work correctly, refs #25585
  • src/hg/hgTracks/vcfTrack.c - lines changed 9, context: html, text, full: html, text
  • src/hg/inc/vcfUi.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/vcfUi.c - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 3, context: html, text, full: html, text

443757e6a04336d7217fca4abe0e3774613323ea Fri May 22 16:22:33 2020 -0700

• Adding a comment to a function after code review, refs #25585
  • src/hg/hgTracks/vcfTrack.c - lines changed 2, context: html, text, full: html, text