Commits for chmalee

v400_preview2 to v400_base (2020-06-15 to 2020-06-22) v400

c652620bda844fbae173f22e801d5935f5d24c98 Tue Jun 16 10:08:35 2020 -0700

• Need valid chromosome list in the parent stanza for trio composite, refs #25582
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 8, context: html, text, full: html, text

a3c14fb7b09c470918286385c0351f3786d7d48e Fri Jun 19 13:13:19 2020 -0700

• Fixing up some clingen related filters and urls, refs #25562
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.clinGen.ra - lines changed 4, context: html, text, full: html, text

37befdf6676de0022c60966291e21e5977dba086 Fri Jun 19 13:46:31 2020 -0700

• Adding clingen cnv and dosage otto job to source tree now that it's been running for a while, refs #25562
  • src/hg/utils/otto/clinGen/checkClinGen.sh - lines changed 39, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/clinGenWrapper.sh - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/makeCnv.sh - lines changed 57, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/makeDosage.sh - lines changed 65, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/processClinGenCnv.py - lines changed 197, context: html, text, full: html, text
  • src/hg/utils/otto/clinGen/processClinGenDosage.py - lines changed 170, context: html, text, full: html, text