Commits for angie

v401_preview2 to v401_base (2020-07-06 to 2020-07-13) v401

791097ea7589f6fadcf825c5c3a8934054917a28 Thu Jul 9 14:38:12 2020 -0700

• VCF haplotype display: trackDb setting geneTrack adds option to color by function (red for non-synon, green for synon, blue for UTR/NC). refs #25870
  • src/hg/hgTracks/hgTracks.h - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/variation.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/vcfTrack.c - lines changed 494, context: html, text, full: html, text
  • src/hg/inc/vcfUi.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/vcfUi.c - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.nextstrain.ra - lines changed 2, context: html, text, full: html, text

fdd15dd4ea30b1f9f319ff22bc2858f00c7aa8ed Fri Jul 10 13:49:45 2020 -0700

• strtod is faster than sscanf; when parsing a tree with ~61k node lengths, it makes a difference of >3s.
  • src/lib/phyloTree.c - lines changed 6, context: html, text, full: html, text