Commits for braney

v400_base to v401_preview (2020-06-22 to 2020-06-29) v401

ea06aed8b961bf688aeeb0c96e8feec6290a4df8 Mon Jun 22 11:42:07 2020 -0700

• remove mergedBGP track
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

a9c9cf2828c124535a1562f709bd4437b1bf60a2 Mon Jun 22 16:41:31 2020 -0700

• starting on making hgGene use and external database for the know* tables
  • src/hg/hgGene/hgGene.c - lines changed 7, context: html, text, full: html, text
  • src/hg/hgGene/hgGene.h - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/links.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/pathways.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGene/synonym.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV35.sh - lines changed 97, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gencodeV35.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/mergedBGP.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text

66e946e37e7c2624155560b1e92b81e35f8391db Thu Jun 25 17:30:21 2020 -0700

• work on gencodeV35
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV35.sh - lines changed 168, context: html, text, full: html, text

97c67666efd79c8d87918466629ee1781138797c Thu Jun 25 17:39:35 2020 -0700

• ongoing work on gencodeV35
  • src/hg/hgGene/pathways.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gencodeV35.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
  • src/hg/near/hgNear/hgNear.c - lines changed 5, context: html, text, full: html, text
  • src/hg/near/hgNear/knownGene.c - lines changed 1, context: html, text, full: html, text

d611c88520ad00874f8f7762507077e7ff95bc26 Fri Jun 26 12:00:51 2020 -0700

• change gitFiles to check to see if git is installed and the current directory is in a repository
  • src/utils/gitTools/gitFiles - lines changed 10, context: html, text, full: html, text

6439ed1dc039ee9c134fa50df54cec3aa3da30a3 Mon Jun 29 10:01:18 2020 -0700

• v401 preview1
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text