Commits for braney

v401_preview to v401_preview2 (2020-06-29 to 2020-07-06) v401

10013c858ac5cffd9b27ce28f401b96ac4031863 Mon Jun 29 15:07:09 2020 -0700

• if trackDb has specific a "table" line, use that and don't look for a bigBed in bigDataUrl
  • src/hg/hgTables/bigBed.c - lines changed 5, context: html, text, full: html, text

1793baa994b25678b511ccfcdc1410cedf1a7d8d Tue Jun 30 16:14:13 2020 -0700

• Revert "if trackDb has specific a "table" line, use that and don't look for a" This reverts commit 10013c858ac5cffd9b27ce28f401b96ac4031863.
  • src/hg/hgTables/bigBed.c - lines changed 5, context: html, text, full: html, text

cf6a9e74cf9c651774984781fc0232a7132db576 Wed Jul 1 09:10:55 2020 -0700

• if "table" is explicitly listed, we're going to use that instead of any bigDataUrl
  • src/hg/hgTables/bigBed.c - lines changed 4, context: html, text, full: html, text

e22f12e30ffc45d4b6657aeca878a22eeb239edd Thu Jul 2 16:05:42 2020 -0700

• add gencode transcript details to hgGene
  • src/hg/hgGene/gencodeSection.c - lines changed 868, context: html, text, full: html, text
  • src/hg/hgGene/gencodeSection.h - lines changed 15, context: html, text, full: html, text
  • src/hg/hgGene/hgGene.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgGene/hgGene.h - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/section.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/hgGene/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV35.sh - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gencodeV35.ra - lines changed 1, context: html, text, full: html, text

1e52f61174270e7af9883502f46935bce628f628 Fri Jul 3 16:48:28 2020 -0700

• can use octothorp to comment in AS files
  • src/lib/asParse.c - lines changed 1, context: html, text, full: html, text

beded063af0162677da2324db2f15ac8ada64936 Fri Jul 3 17:26:50 2020 -0700

• add tiers to gencode file.. fix up filters.
  • src/hg/lib/gencodeBGP.as - lines changed 34, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV35.sh - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gencodeV35.ra - lines changed 3, context: html, text, full: html, text

ceb57b4c14032bbba368796177103a468a078871 Fri Jul 3 18:05:47 2020 -0700

• oops... broke highlightby in filterBy statements
  • src/hg/lib/hui.c - lines changed 6, context: html, text, full: html, text

d5cdbbb51198d600fa48ccb13045e0f96fe45ab0 Sat Jul 4 08:33:37 2020 -0700

• give this structure a better name
  • src/hg/lib/gencodeBGP.as - lines changed 2, context: html, text, full: html, text

7f33e6039d10ec3a4451aeda01d4cd15623b9b49 Mon Jul 6 09:51:30 2020 -0700

• v401 preview2
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text