Commits for chmalee

v401_base to v402_preview (2020-07-13 to 2020-07-20) v402

5e1673a9fadc12f17211b01376f538598f6bb525 Wed Jul 15 11:43:26 2020 -0700

• Adding some trackDb options to hide some VCF config options that are useless for 1000 genomes and sars-cov-2 vcfs, refs #24317
  • src/hg/inc/vcfUi.h - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/vcfUi.c - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 3, context: html, text, full: html, text

4265bc406f5ae78b172dff09d3ff2b922f9930ca Wed Jul 15 14:24:25 2020 -0700

• Documenting new trackDb options to disable vcf filter ui, refs #24317
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 21, context: html, text, full: html, text

944206877334ce5b5c47175110ffbabee88ae831 Thu Jul 16 12:01:34 2020 -0700

• Rename 'vcfNo' trackDb variables to 'vcfDo' so code is more clear, refs Angie email
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 6, context: html, text, full: html, text
  • src/hg/inc/vcfUi.h - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 3, context: html, text, full: html, text

3e50c8a867b33f2ea89bc9f26eb7e13dbcde51e1 Fri Jul 17 09:12:14 2020 -0700

• Adding hg38 to lovd otto build
  • src/hg/utils/otto/lovd/checkAndLoad.sh - lines changed 20, context: html, text, full: html, text
  • src/hg/utils/otto/lovd/download.sh - lines changed 4, context: html, text, full: html, text