File Changes for angie

v402_preview to v402_preview2 (2020-07-20 to 2020-07-27) v402

• src/hg/makeDb/doc/wuhCor1/phylogenetics.txt
  • lines changed 85, context: html, text, full: html, text
    237e07884cbbc8b2f4a9b4d030f782372ed61892 Mon Jul 20 16:20:26 2020 -0700
    Adding Problematic Sites track for SARS-CoV-2. refs #25916
  • lines changed 13, context: html, text, full: html, text
    fd2962e7e75b86f8a231fc382609eb567bc6b906 Wed Jul 22 14:44:34 2020 -0700
    Replacing Rob's tree with a collapsed (mutation nodes only) version from Yatish. refs #25904
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    d98829260a7890c9bc05a55bc8cba2e1a31a533f Fri Jul 24 10:04:21 2020 -0700
    Added instructions for downloading metadata (including lineage assignments) from GISAID/EpiCoV. refs #25904
• src/hg/makeDb/trackDb/virus/wuhCor1/problematicSites.html
  • lines changed 100, context: html, text, full: html, text
    237e07884cbbc8b2f4a9b4d030f782372ed61892 Mon Jul 20 16:20:26 2020 -0700
    Adding Problematic Sites track for SARS-CoV-2. refs #25916
• src/hg/makeDb/trackDb/virus/wuhCor1/sarsCov2Phylo.html
  • lines changed 21, context: html, text, full: html, text
    1928113a8dc1d0a242e722696dbb0c36b6e983c0 Mon Jul 20 10:54:11 2020 -0700
    Add references that reflect UCSC's work on identifying problematic sites to SARS-CoV-2 Phylogeny details (thx David). refs #25904
  • lines changed 10, context: html, text, full: html, text
    fd2962e7e75b86f8a231fc382609eb567bc6b906 Wed Jul 22 14:44:34 2020 -0700
    Replacing Rob's tree with a collapsed (mutation nodes only) version from Yatish. refs #25904
  • lines changed 64, context: html, text, full: html, text
    711cb4fa97618deb2b2f1f92c56ba08e72efec5a Wed Jul 22 17:23:17 2020 -0700
    Added lineage coloring key as requested by David. refs #25904
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    1928113a8dc1d0a242e722696dbb0c36b6e983c0 Mon Jul 20 10:54:11 2020 -0700
    Add references that reflect UCSC's work on identifying problematic sites to SARS-CoV-2 Phylogeny details (thx David). refs #25904
  • lines changed 30, context: html, text, full: html, text
    237e07884cbbc8b2f4a9b4d030f782372ed61892 Mon Jul 20 16:20:26 2020 -0700
    Adding Problematic Sites track for SARS-CoV-2. refs #25916