Commits for angie

1928113a8dc1d0a242e722696dbb0c36b6e983c0 Mon Jul 20 10:54:11 2020 -0700

Add references that reflect UCSC's work on identifying problematic sites to SARS-CoV-2 Phylogeny details (thx David). refs #25904
- src/hg/makeDb/trackDb/virus/wuhCor1/sarsCov2Phylo.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 1, context: html, text, full: html, text

237e07884cbbc8b2f4a9b4d030f782372ed61892 Mon Jul 20 16:20:26 2020 -0700

Adding Problematic Sites track for SARS-CoV-2. refs #25916
- src/hg/makeDb/doc/wuhCor1/phylogenetics.txt - lines changed 85, context: html, text, full: html, text
- src/hg/makeDb/trackDb/virus/wuhCor1/problematicSites.html - lines changed 100, context: html, text, full: html, text
- src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 30, context: html, text, full: html, text

fd2962e7e75b86f8a231fc382609eb567bc6b906 Wed Jul 22 14:44:34 2020 -0700

Replacing Rob's tree with a collapsed (mutation nodes only) version from Yatish. refs #25904
- src/hg/makeDb/doc/wuhCor1/phylogenetics.txt - lines changed 13, context: html, text, full: html, text
- src/hg/makeDb/trackDb/virus/wuhCor1/sarsCov2Phylo.html - lines changed 10, context: html, text, full: html, text

711cb4fa97618deb2b2f1f92c56ba08e72efec5a Wed Jul 22 17:23:17 2020 -0700

Added lineage coloring key as requested by David. refs #25904
- src/hg/makeDb/trackDb/virus/wuhCor1/sarsCov2Phylo.html - lines changed 64, context: html, text, full: html, text

d98829260a7890c9bc05a55bc8cba2e1a31a533f Fri Jul 24 10:04:21 2020 -0700

Added instructions for downloading metadata (including lineage assignments) from GISAID/EpiCoV. refs #25904
- src/hg/makeDb/doc/wuhCor1/phylogenetics.txt - lines changed 10, context: html, text, full: html, text