Commits for chmalee

v404_preview2 to v404_base (2020-09-07 to 2020-09-14) v404

c11260d13e2c55808aa97525c9e5c2205aa768ec Thu Sep 10 11:33:29 2020 -0700

• Make hubCheck warn on missing description pages, refs #13428
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/manyErrors.output.txt - lines changed 37, context: html, text, full: html, text

d4266bc9322e38cdfb07859ab4db8e2671abb4e7 Thu Sep 10 12:44:07 2020 -0700

• Change missing track description page message to indicate it is just a warning, and make all track warnings print if there are no other errors present, refs #13428
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/hubCheck/tests/expected/manyErrors.output.txt - lines changed 72, context: html, text, full: html, text

d156aaa50bbe78b0c05da8cde9cd837d88d659fc Wed Aug 19 12:03:49 2020 -0700

• hgc and hgTrackUi can query a 'relatedTrack' table to print a list of related tracks to the one being looked at along with a reason for the relation, refs #25721
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 77, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 49, context: html, text, full: html, text
  • src/hg/lib/relatedTrack.sql - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/buildRelatedTracks - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/relatedTracks.ra - lines changed 13, context: html, text, full: html, text

8d8e30926803a0fcb3995fc628b2ac30491d144d Fri Sep 11 10:58:00 2020 -0700

• Put related tracks section under hg.conf control in addition to requiring a relatedTrack table, refs #25721
  • src/hg/lib/hui.c - lines changed 3, context: html, text, full: html, text

81666892961b5efc9908c143299e70facb261ca0 Fri Sep 11 14:00:56 2020 -0700

• buildRelatedTracks should not fail when a database does not exist in the relatedTracks file, email from Hiram
  • src/hg/makeDb/trackDb/buildRelatedTracks - lines changed 6, context: html, text, full: html, text

c910dc3f3baff3bca6c6963b2f77c320be2e4fc7 Fri Sep 11 14:27:30 2020 -0700

• Ensure only database matches get loaded into relatedTrack table, refs Hiram
  • src/hg/makeDb/trackDb/buildRelatedTracks - lines changed 2, context: html, text, full: html, text

5596fa9d98471bd8fcc5cc11f151cd5252a61b33 Mon Sep 14 07:51:02 2020 -0700

• Re-enable MGC Genes track, refs #25919 #16394
  • src/hg/makeDb/trackDb/trackDb.genbank.ra - lines changed 16, context: html, text, full: html, text