Commits for hiram

02882e0cda463b6bee5f2061eb89b26a437e42e0 Mon Aug 24 12:26:49 2020 -0700

allow genbank/refseq/ensembl chrom names from chromAlias table for input on bed file custom tracks refs #24396
- src/hg/lib/customFactory.c - lines changed 21, context: html, text, full: html, text

324671bac877d29cafa50dbc8e944c8c554581aa Mon Aug 24 15:04:28 2020 -0700

output bed file with every possible name in a database genome refs #24396
- src/hg/utils/automation/chromAliasBedTest.pl - lines changed 66, context: html, text, full: html, text

57e99ec5381cc522b025ff1259bd27059cc8c19a Tue Aug 25 07:45:19 2020 -0700

remove debug print statement refs #24396
- src/hg/lib/customFactory.c - lines changed 1, context: html, text, full: html, text

19f3bd6bd473e6b5cb3835199c385e7c82329188 Tue Aug 25 12:50:32 2020 -0700

the -priority option needs to be defined properly for the help message no redmine
- src/hg/utils/automation/HgAutomate.pm - lines changed 3, context: html, text, full: html, text

33b5cb286a820d589a23e013a66f8c401c3682bd Tue Aug 25 16:44:36 2020 -0700

better naming of the alias elements to see their names in the track refs #24396
- src/hg/utils/automation/chromAliasBedTest.pl - lines changed 1, context: html, text, full: html, text

3f67e4d0d91bb2f319c9ae26d9dff4eb47990d61 Wed Aug 26 09:14:38 2020 -0700

must limit name length to under 255 refs #24396
- src/hg/utils/automation/chromAliasBedTest.pl - lines changed 5, context: html, text, full: html, text

653eaa635409806f4885b0486125efd4390c0931 Thu Aug 27 14:00:07 2020 -0700

fix scripts to behave properly when not using UCSC sequence names refs #23734
- src/hg/utils/automation/doAssemblyHub.pl - lines changed 30, context: html, text, full: html, text
- src/hg/utils/automation/doNcbiRefSeq.pl - lines changed 114, context: html, text, full: html, text
- src/hg/utils/automation/ncbiRefSeqOtherAttrs.pl - lines changed 1, context: html, text, full: html, text