File Changes for hiram

v405_preview2 to v405_base (2020-09-28 to 2020-10-05) v405

• src/hg/hgTracks/hgTracks.c
  • lines changed 10, context: html, text, full: html, text
    a43e257f2404b7af25e1df558a491566b5c53158 Wed Sep 30 08:29:37 2020 -0700
    allow database browsers to also display the chromAlias.txt file as download link when exists refs #24396
• src/hg/makeDb/doc/asmHubs/asmHubs.mk
  • lines changed 1, context: html, text, full: html, text
    a3c7c2078036b9b4de1727fe11bb9baac001369e Mon Sep 28 13:32:18 2020 -0700
    now with chromAlias and chromSizes in genomes.txt refs #23891
• src/hg/makeDb/doc/asmHubs/mkGenomes.pl
  • lines changed 12, context: html, text, full: html, text
    a3c7c2078036b9b4de1727fe11bb9baac001369e Mon Sep 28 13:32:18 2020 -0700
    now with chromAlias and chromSizes in genomes.txt refs #23891
• src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
  • lines changed 1, context: html, text, full: html, text
    a3c7c2078036b9b4de1727fe11bb9baac001369e Mon Sep 28 13:32:18 2020 -0700
    now with chromAlias and chromSizes in genomes.txt refs #23891
• src/hg/makeDb/doc/asmHubs/mkSymLinks.pl
  • lines changed 4, context: html, text, full: html, text
    a3c7c2078036b9b4de1727fe11bb9baac001369e Mon Sep 28 13:32:18 2020 -0700
    now with chromAlias and chromSizes in genomes.txt refs #23891
• src/hg/makeDb/doc/mammalsAsmHub/makefile
  • lines changed 18, context: html, text, full: html, text
    8e4ce4cd8252d3c8bb320b1ded1fd7c421f626b4 Mon Sep 28 13:30:26 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 106, context: html, text, full: html, text
    8e4ce4cd8252d3c8bb320b1ded1fd7c421f626b4 Mon Sep 28 13:30:26 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/vgpAsmHub/altMakefile
  • lines changed 1, context: html, text, full: html, text
    1cc4eaf6e99b61624242185308c9d072ccac19f2 Mon Sep 28 12:53:23 2020 -0700
    update to new destDir refs #23891
• src/hg/makeDb/doc/vgpAsmHub/legacyMakefile
  • lines changed 1, context: html, text, full: html, text
    1cc4eaf6e99b61624242185308c9d072ccac19f2 Mon Sep 28 12:53:23 2020 -0700
    update to new destDir refs #23891
• src/hg/makeDb/doc/vgpAsmHub/trioMakefile
  • lines changed 1, context: html, text, full: html, text
    1cc4eaf6e99b61624242185308c9d072ccac19f2 Mon Sep 28 12:53:23 2020 -0700
    update to new destDir refs #23891
• src/hg/makeDb/doc/vgpAsmHub/userDataMakefile
  • lines changed 1, context: html, text, full: html, text
    1cc4eaf6e99b61624242185308c9d072ccac19f2 Mon Sep 28 12:53:23 2020 -0700
    update to new destDir refs #23891
• src/hg/makeDb/trackDb/marmoset/calJac4/trackDb.7way.ra
  • lines changed 106, context: html, text, full: html, text
    d6e64b4a30d137b081f91ec864a2d7ff83f0aed8 Thu Oct 1 15:11:03 2020 -0700
    a first look at a 7-way refs #24074
• src/hg/makeDb/trackDb/marmoset/calJac4/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    d6e64b4a30d137b081f91ec864a2d7ff83f0aed8 Thu Oct 1 15:11:03 2020 -0700
    a first look at a 7-way refs #24074
• src/hg/utils/automation/asmHubChromAlias.pl
  • lines changed 4, context: html, text, full: html, text
    b2b24fc1972e32973020518288369e2582a7ffcf Wed Sep 30 12:39:12 2020 -0700
    fixup errors in building a hub without UCSC names refs #24386
• src/hg/utils/automation/doAssemblyHub.pl
  • lines changed 26, context: html, text, full: html, text
    b2b24fc1972e32973020518288369e2582a7ffcf Wed Sep 30 12:39:12 2020 -0700
    fixup errors in building a hub without UCSC names refs #24386