File Changes for chmalee

v405_preview to v405_preview2 (2020-09-21 to 2020-09-28) v405

• src/hg/hgc/vcfClick.c
  • lines changed 33, context: html, text, full: html, text
    a3e03473bbde188141b61d0c3db48c85d2ec6aa3 Tue Sep 22 17:38:13 2020 -0700
    Basic vcf to bed converter, with a -fields argument for what VCF INFO tags to include in the bigBed itself, refs #25010
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    d7258f3b93b43cac09ac69d4cf04aae663edf00a Tue Sep 22 16:12:09 2020 -0700
    Fixing typo in decipherSnvs stanza
• src/hg/utils/otto/dbVar/dbVarWrapper.sh
  • lines changed 1, context: html, text, full: html, text
    cdf38279ca376913f58c332cbaeca92f573fc9bd Tue Sep 22 11:26:51 2020 -0700
    Keep dbVar otto scripts up to date
• src/hg/utils/otto/dbVar/processNstd175.py
  • lines changed 6, context: html, text, full: html, text
    f0cd304218bd294a3630f6d12f42325d3c6472d5 Tue Sep 22 11:24:43 2020 -0700
    Fix genome in a bottle structural variants build script to not fail when a field is missing from input
• src/hg/utils/otto/lovd/lovd.long.as
  • lines changed 1, context: html, text, full: html, text
    2ecc3d06e54d325c3e45850738ddd44b19f79a23 Tue Sep 22 07:41:43 2020 -0700
    Fix lovd short and long table names in autoSql, refs build email
• src/hg/utils/otto/lovd/lovd.short.as
  • lines changed 1, context: html, text, full: html, text
    2ecc3d06e54d325c3e45850738ddd44b19f79a23 Tue Sep 22 07:41:43 2020 -0700
    Fix lovd short and long table names in autoSql, refs build email
• src/hg/utils/vcfToBed/makefile
  • lines changed 3, context: html, text, full: html, text
    a3e03473bbde188141b61d0c3db48c85d2ec6aa3 Tue Sep 22 17:38:13 2020 -0700
    Basic vcf to bed converter, with a -fields argument for what VCF INFO tags to include in the bigBed itself, refs #25010
• src/hg/utils/vcfToBed/vcfToBed.c
  • lines changed 282, context: html, text, full: html, text
    a3e03473bbde188141b61d0c3db48c85d2ec6aa3 Tue Sep 22 17:38:13 2020 -0700
    Basic vcf to bed converter, with a -fields argument for what VCF INFO tags to include in the bigBed itself, refs #25010
  • lines changed 164, context: html, text, full: html, text
    13db5365510728c1e96d96110a6fe86065949b8a Thu Sep 24 16:17:54 2020 -0700
    Make vcfToBed way more basic and don't do any special parsing of VCF specific stuff, just chop out requested fields, refs #25010
  • lines changed 108, context: html, text, full: html, text
    1562b816fff70fb76a2c67341e5488c562e51857 Fri Sep 25 14:52:52 2020 -0700
    Code cleanup in vcfToBed and fix wrong array length variable for looping over info fields, refs #25010
• src/inc/vcf.h
  • lines changed 13, context: html, text, full: html, text
    a3e03473bbde188141b61d0c3db48c85d2ec6aa3 Tue Sep 22 17:38:13 2020 -0700
    Basic vcf to bed converter, with a -fields argument for what VCF INFO tags to include in the bigBed itself, refs #25010
  • lines changed 6, context: html, text, full: html, text
    13db5365510728c1e96d96110a6fe86065949b8a Thu Sep 24 16:17:54 2020 -0700
    Make vcfToBed way more basic and don't do any special parsing of VCF specific stuff, just chop out requested fields, refs #25010
• src/lib/vcf.c
  • lines changed 26, context: html, text, full: html, text
    a3e03473bbde188141b61d0c3db48c85d2ec6aa3 Tue Sep 22 17:38:13 2020 -0700
    Basic vcf to bed converter, with a -fields argument for what VCF INFO tags to include in the bigBed itself, refs #25010
  • lines changed 1, context: html, text, full: html, text
    13db5365510728c1e96d96110a6fe86065949b8a Thu Sep 24 16:17:54 2020 -0700
    Make vcfToBed way more basic and don't do any special parsing of VCF specific stuff, just chop out requested fields, refs #25010