File Changes for hiram

v405_preview to v405_preview2 (2020-09-21 to 2020-09-28) v405

• src/hg/hgTracks/hgTracks.c
  • lines changed 15, context: html, text, full: html, text
    9ca89f9ff4facb407acfd0a8e970472a45be29a0 Tue Sep 22 11:48:06 2020 -0700
    adding chrom.sizes as download file for hgTracks sequences in assembly hubs refs #24396
• src/hg/inc/trackHub.h
  • lines changed 8, context: html, text, full: html, text
    ea3c06ec82f3f1df48c529c77d2667ead355edf3 Tue Sep 22 11:51:11 2020 -0700
    adding chrom.sizes as download file for hgTracks sequences in assembly hubs refs #24396
• src/hg/lib/hdb.c
  • lines changed 28, context: html, text, full: html, text
    f619ad52904568bd108d65e34d2e10cb381f439e Mon Sep 21 14:04:09 2020 -0700
    now recognizing assembly hub chromAlias file to allow bed type custom tracks with other names refs #24396
• src/hg/lib/trackHub.c
  • lines changed 19, context: html, text, full: html, text
    f619ad52904568bd108d65e34d2e10cb381f439e Mon Sep 21 14:04:09 2020 -0700
    now recognizing assembly hub chromAlias file to allow bed type custom tracks with other names refs #24396
  • lines changed 28, context: html, text, full: html, text
    9ca89f9ff4facb407acfd0a8e970472a45be29a0 Tue Sep 22 11:48:06 2020 -0700
    adding chrom.sizes as download file for hgTracks sequences in assembly hubs refs #24396
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 65, context: html, text, full: html, text
    cbde4b68d111496a694ee94430b6d64511d620e7 Fri Sep 25 12:45:04 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/birdsAsmHub/makefile
  • lines changed 19, context: html, text, full: html, text
    cbde4b68d111496a694ee94430b6d64511d620e7 Fri Sep 25 12:45:04 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 76, context: html, text, full: html, text
    cbde4b68d111496a694ee94430b6d64511d620e7 Fri Sep 25 12:45:04 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/fishAsmHub/makefile
  • lines changed 19, context: html, text, full: html, text
    cbde4b68d111496a694ee94430b6d64511d620e7 Fri Sep 25 12:45:04 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/primatesAsmHub/makefile
  • lines changed 20, context: html, text, full: html, text
    c11977132896e151af8ce9254baa6d5b130e9b40 Fri Sep 25 11:16:33 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 22, context: html, text, full: html, text
    c11977132896e151af8ce9254baa6d5b130e9b40 Fri Sep 25 11:16:33 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/vertebrateAsmHub/makefile
  • lines changed 18, context: html, text, full: html, text
    cbde4b68d111496a694ee94430b6d64511d620e7 Fri Sep 25 12:45:04 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 26, context: html, text, full: html, text
    cbde4b68d111496a694ee94430b6d64511d620e7 Fri Sep 25 12:45:04 2020 -0700
    update to new make system refs #23891
• src/hg/makeDb/doc/vgpAsmHub/makefile
  • lines changed 1, context: html, text, full: html, text
    cbde4b68d111496a694ee94430b6d64511d620e7 Fri Sep 25 12:45:04 2020 -0700
    update to new make system refs #23891
• src/hg/utils/automation/asmHubChromAlias.pl
  • lines changed 161, context: html, text, full: html, text
    c270fe6ea9ae2701f1d41dc3b4180ac511dff187 Mon Sep 21 14:55:35 2020 -0700
    initial script works only on araTha refs #24396
  • lines changed 120, context: html, text, full: html, text
    464d0311d4ec35f8ffe669e3ef75aa7f374ba926 Mon Sep 21 17:44:51 2020 -0700
    begin to work in the chromAlias construction to the assembly hubs refs #24396
  • lines changed 78, context: html, text, full: html, text
    46d4388aa7f2d939c4712d33053812d7ec1a7f97 Wed Sep 23 09:55:39 2020 -0700
    accomodate duplicate sequences refs #24396
  • lines changed 2, context: html, text, full: html, text
    b1852a4dd2bbc53c29c822f0d6a0e40d1af7a713 Wed Sep 23 10:11:32 2020 -0700
    accomodate duplicate sequences refs #24396
• src/hg/utils/automation/doAssemblyHub.pl
  • lines changed 39, context: html, text, full: html, text
    4f09e8ddd0fc70577eb8727e38a87896bfd57e84 Wed Sep 23 09:56:28 2020 -0700
    adding chromAlias build refs #24396