Commits for hiram

v406_base to v407_preview (2020-10-26 to 2020-11-02) v407

a7784bd524306cf2cb63fc2ae2a4bb0ea4258c34 Mon Oct 26 10:02:43 2020 -0700

• lastz chainNet mm39 rn6 rheMac10 per MarkD request no redmine
  • src/hg/makeDb/doc/mm39/lastzRuns.txt - lines changed 132, context: html, text, full: html, text
  • src/hg/makeDb/doc/rheMac10/lastzRuns.txt - lines changed 66, context: html, text, full: html, text

75af194934ace57ff16cb6ecd8854c94da7bc567 Mon Oct 26 10:05:09 2020 -0700

• liftOver to calJac4 refs #24074
  • src/hg/makeDb/doc/calJac3.txt - lines changed 22, context: html, text, full: html, text

b7bdc7ab888afd8258d4b4219c324ee96a28dd70 Mon Oct 26 10:13:13 2020 -0700

• fix build of GenomicDiff track refs #24074
  • src/hg/utils/automation/doNcbiRefSeq.pl - lines changed 16, context: html, text, full: html, text

0e367d14f1a802e6b644b86f1ea40d48d72c3426 Mon Oct 26 12:16:21 2020 -0700

• a very dirty version as this changes to more efficient mechanism refs #21980
  • src/hg/js/mouseOver.js - lines changed 101, context: html, text, full: html, text

e325b487322b1ae05b838b968ee933718890ebb4 Mon Oct 26 12:38:06 2020 -0700

• begin transition to track specific mouse movement events refs #21980
  • src/hg/js/mouseOver.js - lines changed 76, context: html, text, full: html, text

17e44fabd4e14d3bfe8aa6a6e06479b0031a2218 Mon Oct 26 15:21:47 2020 -0700

• cleaning up for better operation refs #21980
  • src/hg/js/mouseOver.js - lines changed 35, context: html, text, full: html, text

c3e7b398ffd33e71d9810e6f8906e3caf57290a3 Mon Oct 26 15:54:45 2020 -0700

• correctly following window scrolling refs #21980
  • src/hg/js/mouseOver.js - lines changed 32, context: html, text, full: html, text

465349055c8c59f2afc587972673c5761cff2f9b Mon Oct 26 16:04:09 2020 -0700

• correct X position for message when window is scrolled left-right in browser refs #21980
  • src/hg/js/mouseOver.js - lines changed 2, context: html, text, full: html, text

759bf533411ead63f7b23fccd569a37998c87d9c Mon Oct 26 16:30:43 2020 -0700

• isolate the popUp visible/disappear functions refs #21980
  • src/hg/js/mouseOver.js - lines changed 28, context: html, text, full: html, text

303adeb8a48cd1cc7a87876ab80b0620d269b227 Tue Oct 27 12:32:10 2020 -0700

• odd behavior did not recognize ~ meaning HOME refs #26428
  • src/hg/utils/automation/doNcbiRefSeq.pl - lines changed 1, context: html, text, full: html, text

33c5e452f2df131473468f0206a360a16ba9dcd3 Tue Oct 27 13:15:17 2020 -0700

• update per alert from Terence for new versions although hg19 needs to wait for the new files refs #26428
  • src/hg/makeDb/doc/hg19.txt - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/ncbiRefSeq.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm39/initialBuild.txt - lines changed 16, context: html, text, full: html, text

77022fe69d73bf7488dedd6a7a0c5a9dea3e854a Tue Oct 27 14:16:26 2020 -0700

• appears to be working OK even in dynamic update move refs #21980
  • src/hg/hgTracks/wigTrack.c - lines changed 37, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 1, context: html, text, full: html, text
  • src/hg/js/mouseOver.js - lines changed 83, context: html, text, full: html, text

03c9bfc4c9a1746228e2eb542ffd1f30851e83a4 Thu Oct 29 12:59:48 2020 -0700

• add mouseOver data display, commented out for this check in, uncomment to turn on refs #21980
  • src/hg/js/hgTracks.js - lines changed 225, context: html, text, full: html, text

860701f5cd184dc8809597a60156cc90be76fff8 Thu Oct 29 13:10:12 2020 -0700

• jshint clean refs #21980
  • src/hg/js/hgTracks.js - lines changed 9, context: html, text, full: html, text

956931c1182aa23149d482f644f5d8a7626f489d Thu Oct 29 13:13:46 2020 -0700

• no longer need the secret MAP element to trigger mouseOver display refs #21980
  • src/hg/hgTracks/wigTrack.c - lines changed 11, context: html, text, full: html, text

533583a421946922c86b82261adbde2c756004d8 Thu Oct 29 13:15:03 2020 -0700

• mouseOver.js code has moved into hgTracks.js refs #21980
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text

41b1a2b603d2d1103b1cce9989a7f92aa76df840 Thu Oct 29 13:54:31 2020 -0700

• mouseOver function now enabled by hg.conf variable refs #21980
  • src/hg/js/hgTracks.js - lines changed 6, context: html, text, full: html, text

dd675e620b195081c73d06b62f633c70eef7cf31 Thu Oct 29 13:56:28 2020 -0700

• mouseOver now enabled via hg.conf variable refs #21980
  • src/hg/hgTracks/hgTracks.c - lines changed 15, context: html, text, full: html, text

7f07969209248e6ad775df9417b9b185147c1cd2 Thu Oct 29 14:36:56 2020 -0700

• allow mouseOver to turn on and off via hg.conf variable refs #21980
  • src/hg/hgTracks/hgTracks.c - lines changed 15, context: html, text, full: html, text
  • src/hg/hgTracks/wigTrack.c - lines changed 22, context: html, text, full: html, text
  • src/hg/htdocs/style/makefile - lines changed 1, context: html, text, full: html, text

c2e38dac3089cb5e3cacc3cc9a66ed530f845870 Thu Oct 29 14:38:35 2020 -0700

• remove debug statements refs #21980
  • src/hg/hgTracks/wigTrack.c - lines changed 4, context: html, text, full: html, text

9dc6d1c33adc6494044cf57bc597cb4238e357d0 Thu Oct 29 15:57:36 2020 -0700

• recover purple color and z-index to get it to the top refs #21980
  • src/hg/htdocs/style/mouseOver.css - lines changed 2, context: html, text, full: html, text

45c2b537f043cbfd70658e8f391bf816492e19d1 Fri Oct 30 08:33:45 2020 -0700

• last dirty checkin before moving this code to hgTracks.js refs #21980
  • src/hg/js/mouseOver.js - lines changed 97, context: html, text, full: html, text

dbce21427e784f7f4bfef41d791082158c50d2ec Fri Oct 30 16:32:54 2020 -0700

• add a verticle line to indicate where on the graph the pointer is refs #21980
  • src/hg/hgTracks/wigTrack.c - lines changed 1, context: html, text, full: html, text

479e3ae7b94f06ee5374eb22a867a621a044a963 Fri Oct 30 16:33:25 2020 -0700

• add a verticle line to indicate where on the graph the pointer is refs #21980
  • src/hg/htdocs/style/mouseOver.css - lines changed 11, context: html, text, full: html, text

fa4c30bd748a9c94307d007cba26dd1505995e82 Fri Oct 30 16:38:22 2020 -0700

• add error handline on failed json read and vertical hightline line to indicate where on graph value is and turn off popUp when window scrolls refs #21980
  • src/hg/js/hgTracks.js - lines changed 55, context: html, text, full: html, text

6d50d3a3b9e467e61853333fb6239eace1eaf70a Fri Oct 30 16:45:14 2020 -0700

• should be fixed position refs #21980
  • src/hg/htdocs/style/mouseOver.css - lines changed 1, context: html, text, full: html, text

1bad77cde561abffb1db68d686ddd1de11ef8649 Fri Oct 30 21:27:35 2020 -0700

• correctly handle failedRequest and smaller vertical line however once a track is knocked out it does not come back with zoom in refs #21980
  • src/hg/htdocs/style/mouseOver.css - lines changed 4, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 21, context: html, text, full: html, text