Commits for max

v407_base to v408_preview (2020-11-16 to 2020-11-23) v408

cd69498b2b6c061ac5900e57a7fc2cba0ffcb954 Wed Nov 18 11:20:53 2020 -0800

• fixing bug in exon numbers on knowngene, temporary fix, refs #25325
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text

aa3b27394f87202be3140c6c961c05f934f928ca Thu Nov 19 03:28:16 2020 -0800

• fixing bug where knownGene on hg19 didn't show up the exon number mouseover, refs #25325
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text

fdfd62aee9d6810c469b156f84687b7535604436 Thu Nov 19 04:46:08 2020 -0800

• adding more exonnumbers statements, refs #25325
  • src/hg/makeDb/trackDb/mouse/mm10/knownGene.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.ra - lines changed 2, context: html, text, full: html, text

9e006b729dc772306ef1d23ca9171308051278b4 Fri Nov 20 06:49:57 2020 -0800

• Adding wuhCor1 track for protein binding microarray data for the S protein, refs #26564
  • src/hg/makeDb/doc/wuhCor1/pbmShanghai.txt - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbm.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbm.ra - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbmIggCovid.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbmIggHealthy.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbmIgmCovid.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbmIgmHealthy.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbmShanghai.html - lines changed 80, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbmShanghai.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbmShanghaiIgg.ra - lines changed 604, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbmShanghaiIgm.ra - lines changed 605, context: html, text, full: html, text
  • src/utils/bigHeat - lines changed 315, context: html, text, full: html, text

03d425545a21bdb2c227c7c3af4112f5edc04999 Mon Nov 23 02:28:26 2020 -0800

• fixing include line of micoarray wuhCor1 tracks, refs #26564
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 2, context: html, text, full: html, text

262ca5711bd80d3df1f85cd1a836063e52a7a4e0 Mon Nov 23 04:43:33 2020 -0800

• small fix to chromToUcsc for the special case of a mix of fixedStep + bed-Graph, no redmine
  • src/utils/chromToUcsc/chromToUcsc - lines changed 7, context: html, text, full: html, text

d0ab96bfa4307ef666f194cdd2bda05608972cd1 Mon Nov 23 04:44:23 2020 -0800

• trying to address a problem in bedFixBlockOverlaps that appears in the uniprot otto pipeline. This is a hacky fix, but the problem only appears in very unusual assemblies, not on any mammal. refs #25784
  • src/utils/bedFixBlockOverlaps - lines changed 8, context: html, text, full: html, text

84285974728864d308855bd4bd62c0a6b42be4fd Mon Nov 23 05:04:22 2020 -0800

• change after code review, refs #26550
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text

2ed976a69da52347f6032f63fe5133ffe9ebce60 Mon Nov 23 05:36:04 2020 -0800

• Finally understood how the two wuhCor1 microarray tracks are different, adapting docs page a little, refs #26518
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbm.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pbmShanghai.html - lines changed 2, context: html, text, full: html, text