Commits for chmalee

v409_base to v410_preview (2021-01-18 to 2021-01-25) v410

fbca997208c852dc1ea6d11ef9ab7f42b4378625 Tue Jan 19 10:34:09 2021 -0800

• Bump up size of buffer for mrna description in search results, refs #26832
  • src/hg/lib/hgFind.c - lines changed 1, context: html, text, full: html, text

92ba2942672d7b3fc8949876783ec4f8b82dd7c2 Wed Jan 20 10:06:17 2021 -0800

• Fixing up release tags, fix up pennant icon, fix up population frequencies table name for gnomAD v3.1, refs #26449
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 67, context: html, text, full: html, text

50277afc74c5d842e51edaca23183ec6f63ebe2d Thu Jan 21 10:32:43 2021 -0800

• Fixing typo in population frequencies table title pointed out in email by Gerardo
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 1, context: html, text, full: html, text

c0d5a48b95aae318fe5ab5f12b14149356d17753 Thu Jan 21 11:46:02 2021 -0800

• Support mouseOver trackDb setting for bigPsl (previously allowed but not supported) and add generic position information for bigPsl clicks, both to get lrg bigPsl otto track up to date with old version, refs #24672
  • src/hg/hgTracks/bigBedTrack.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

73e45ce8ceee39823400e8c1c7e7fc9d1d363f4c Fri Jan 22 08:40:30 2021 -0800

• Support the standard bigBed URL substitutinos in bigPsl, refs #24672
  • src/hg/hgc/hgc.c - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 2, context: html, text, full: html, text

1c36e8ebf0e5ddd3d5c3ee9fa2fd492bef5c41a0 Fri Jan 22 11:00:09 2021 -0800

• Allow bedJoinTabOffset to index on a field other than the name field, refs #26837
  • src/utils/bedJoinTabOffset/bedJoinTabOffset.c - lines changed 19, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset/tests/expectedOut1.bed - lines changed 3, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset/tests/expectedOut2.bed - lines changed 3, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset/tests/in.bed - lines changed 3, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset/tests/in1.tab - lines changed 4, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset/tests/in2.tab - lines changed 4, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset/tests/makefile - lines changed 16, context: html, text, full: html, text
  • src/utils/bedJoinTabOffset/tests/out3.bed - lines changed 3, context: html, text, full: html, text

ae1c89ec531bf7384e5091b93078a138a3a24494 Fri Jan 22 11:42:05 2021 -0800

• Removing default filter on annotation type for gnomad tracks, refs bob email
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 1, context: html, text, full: html, text