Commits for braney

v410_preview to v410_preview2 (2021-01-25 to 2021-02-01) v410

988cf706accde68911964e78b3e63a9c27ade512 Tue Jan 26 12:20:41 2021 -0800

• remove unused remoteFileExists()
  • src/inc/portable.h - lines changed 3, context: html, text, full: html, text
  • src/lib/osunix.c - lines changed 15, context: html, text, full: html, text

9c6055fba90d52e081a16fa54bd3a2b31a7243a6 Wed Jan 27 16:30:13 2021 -0800

• changing back to the old knownGene model
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/bigBedTrack.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 13, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV36.sh - lines changed 136, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

05aabb8581b9175ce0511324bb158456d1b2b7ca Thu Jan 28 09:15:30 2021 -0800

• plug in the right html from knownGene alpha
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.html - lines changed 66, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 1, context: html, text, full: html, text

7528b6b68b9162fb9c69b2ffb43fde8eea9e3a35 Thu Jan 28 17:51:12 2021 -0800

• check the RR or beta for the presence of bigDataUrl referenced files before adding them to trackDb.
  • src/hg/makeDb/trackDb/makefile - lines changed 33, context: html, text, full: html, text

0bf35fe45f0e6dd61969f84fdf301348e3a9ec5f Fri Jan 29 07:45:39 2021 -0800

• oops... left a Test in where there shouldn't be one
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text

31f6f53e9ec2946db4073667fe6e73948375c773 Fri Jan 29 09:30:53 2021 -0800

• back out a change that was causing hgGene to not support getting sequence if it's a gene track that uses bigGeneDataUrl
  • src/hg/hgc/hgc.c - lines changed 5, context: html, text, full: html, text

f0f0e9189da0e57ce9d327d9ac8720ae01570bdc Fri Jan 29 14:48:21 2021 -0800

• ignore errors from find when making beta or public
  • src/hg/makeDb/trackDb/makefile - lines changed 4, context: html, text, full: html, text

85a7810c3a3b38ab63d10e84434469d231bc225e Mon Feb 1 10:04:20 2021 -0800

• v410 preview2, refs #26867
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text