Commits for hiram

v415_preview to v415_preview2 (2021-05-10 to 2021-05-17) v415

b9f7ddc7bbae881dd79b74932bc6c94d26b94bdf Mon May 10 11:47:23 2021 -0700

• turning on dynamic blat for both hgwdev and the hgdownload files refs #26658
  • src/hg/makeDb/doc/asmHubs/mkGenomes.pl - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/asmHubs/mkSymLinks.pl - lines changed 2, context: html, text, full: html, text

ee5fb71ffc745a779ad96a5026035d807379b5ce Wed May 12 14:05:51 2021 -0700

• adding canFam6 dog to the browser refs #27546
  • src/hg/makeDb/trackDb/dog/canFam6/description.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam6/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam6/gold.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam6/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text

c516c8baafafb02e61279dcb6f55a3ee11caf902 Wed May 12 14:54:54 2021 -0700

• beginning canFam6 build running RepeatMasker refs #27546
  • src/hg/makeDb/doc/canFam6/initialBuild.txt - lines changed 1263, context: html, text, full: html, text

c452b251239a5b6079fab90b2993fe8c73496555 Thu May 13 08:17:11 2021 -0700

• no need to have 7-way and 20-way tracks on for the RR set them to alpha only refs #27519
  • src/hg/makeDb/trackDb/human/hg38/trackDb.241way.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

bf4b7a0faf40fc5c2c30fb25e31440e9d5b1d142 Thu May 13 10:57:12 2021 -0700

• Added canFam6 dog; refs #27546
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 18, context: html, text, full: html, text

19fa382f6aae23ca45153161c026c20aa92102c1 Thu May 13 10:58:11 2021 -0700

• Added canFam6 - dog refs #27546
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 2, context: html, text, full: html, text

941fb54cd21a4fbc5bd4f3fe4b03b71524eb4440 Thu May 13 11:29:06 2021 -0700

• adding refSeqComposite and search rule for gold/assembly track refs #27546
  • src/hg/makeDb/trackDb/dog/canFam6/trackDb.ra - lines changed 7, context: html, text, full: html, text

9bcc66741dba603dc21ffdf16e66bd237611e58d Thu May 13 11:41:11 2021 -0700

• adding rules for canFam6 refs #27546
  • src/hg/makeDb/schema/all.joiner - lines changed 8, context: html, text, full: html, text

e42a6c8b3f120d7ce0234e1277977b6de2b198f7 Thu May 13 11:50:34 2021 -0700

• ready for the chainNet lastz runs refs #27546
  • src/hg/makeDb/doc/canFam6/initialBuild.txt - lines changed 244, context: html, text, full: html, text

9a2f1da0c665b5b5afb248b89e2a18418f993aac Thu May 13 13:15:15 2021 -0700

• better naming for archived versions refs #24735
  • src/hg/utils/automation/doNcbiRefSeq.pl - lines changed 12, context: html, text, full: html, text

b7a13e758fbac753f9abd086f0aa01ca357d54da Thu May 13 14:20:03 2021 -0700

• run up update refs #27552
  • src/hg/makeDb/doc/hg38/ncbiRefSeq.txt - lines changed 15, context: html, text, full: html, text

14a9a1f2db57dd3e729c55265099691017295c05 Fri May 14 12:22:29 2021 -0700

• clarify single directory for downloads refs #27519
  • src/hg/makeDb/trackDb/human/hg38/cons241way.html - lines changed 3, context: html, text, full: html, text

d822406ab76774a681c2509b4232dd3a31f459ea Fri May 14 12:49:29 2021 -0700

• completed documentation for cactus 241 way track refs #27519
  • src/hg/makeDb/doc/hg38/cactus241way.txt - lines changed 1043, context: html, text, full: html, text