Commits for markd

v416_preview to v416_preview2 (2021-06-01 to 2021-06-07) v416

d336a27e7f63d6b9228461464ef00acf64939ad8 Sun Jun 6 20:18:19 2021 -0700

• Added test case for -tab. Though there was a bug, not sure now, but another test is a good thing
  • src/utils/bedToBigBed/tests/input/tabSep.as - lines changed 11, context: html, text, full: html, text
  • src/utils/bedToBigBed/tests/input/tabSep.bed - lines changed 10, context: html, text, full: html, text
  • src/utils/bedToBigBed/tests/makefile - lines changed 7, context: html, text, full: html, text

8cbd73320598db4c37c75666e518622f82fbc326 Sun Jun 6 20:53:15 2021 -0700

• added option for chromToUcsc to skip unmapped chromosomes rather than error
  • src/utils/chromToUcsc/chromToUcsc - lines changed 22, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/expected/mm10.bad-names.bed - lines changed 2, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/expected/mm10.bad-names.err - lines changed 3, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/in/mm10.bad-names.bed - lines changed 6, context: html, text, full: html, text
  • src/utils/chromToUcsc/tests/makefile - lines changed 16, context: html, text, full: html, text

d7e3477e89a22c7a00c5ac85528d2d21477695f8 Sun Jun 6 22:06:34 2021 -0700

• allow mate chrom name of "*"
  • src/utils/chromToUcsc/chromToUcsc - lines changed 1, context: html, text, full: html, text