Commits for markd

v417_preview2 to v417_base (2021-06-28 to 2021-07-05) v417

f42dddff0ade4e265463411f9526491ec4e4c84a Tue Jun 29 15:06:30 2021 -0700

• replace gencode V38 pre-release with final
  • src/hg/makeDb/doc/hg38/gencode.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/gencodeLoad.mk - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV38.html - lines changed 1, context: html, text, full: html, text

2e85d518a6bc169b901b3c0b57e24b45694296fc Tue Jun 29 16:05:38 2021 -0700

• update GENCODE VM27 from pre-release from final
  • src/hg/makeDb/doc/mm39/gencode.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/gencodeLoad.mk - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeSuper.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM27.html - lines changed 1, context: html, text, full: html, text

703e07e1d02ee1e346d5dcf6c0610a3d4d5f4069 Tue Jun 29 17:12:38 2021 -0700

• import of GENCODE V38lift37
  • src/hg/makeDb/doc/hg19.gencode.txt - lines changed 50, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/gencodeLoad.mk - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 157, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV38lift37.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV38lift37.ra - lines changed 224, context: html, text, full: html, text

eb58511478b5cff91b41234e38327c4cdb3c8a3a Tue Jun 29 18:52:21 2021 -0700

• forgot to enable V38lift37
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 8, context: html, text, full: html, text

de64c79aa1f9e02854d88d6d53a442b8eb5c8474 Tue Jun 29 19:02:31 2021 -0700

• removed dead-end scheme change checks
  • src/hg/makeDb/schema/all.joiner - lines changed 102, context: html, text, full: html, text