Commits for hiram

2ce16411b0f909e7e1dfd27a01af34316c260f2f Mon Jul 5 11:58:27 2021 -0700

catching up the edge cases for pair wise alignment to assembly hub genome no redmine
- src/hg/utils/automation/asmHubChainNetTrackDb.pl - lines changed 124, context: html, text, full: html, text
- src/hg/utils/automation/asmHubTrackDb.sh - lines changed 5, context: html, text, full: html, text
- src/hg/utils/automation/doBlastzChainNet.pl - lines changed 30, context: html, text, full: html, text
- src/hg/utils/automation/pairLastz.sh - lines changed 52, context: html, text, full: html, text

d17fec88b0ca3f013cd98a01bd65a928ddb349e9 Mon Jul 5 13:07:20 2021 -0700

now with syntenic and reciprocal best no redmine
- src/hg/utils/automation/asmHubChainNetTrackDb.pl - lines changed 96, context: html, text, full: html, text

6ac74bb165759e57dc5cf57cd3eba54eaebc4a36 Mon Jul 5 13:28:45 2021 -0700

adding zebrafish/T5D/GCA_018400075.1_ASM1840007v1 chainNets refs #27512
- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra - lines changed 57, context: html, text, full: html, text

2b42d05e58a971f49afdd6d52c2ad415e165add0 Tue Jul 6 12:37:28 2021 -0700

create a GTF file for the xenoRefGene result refs #27512
- src/hg/utils/automation/asmHubTrackDb.sh - lines changed 6, context: html, text, full: html, text
- src/hg/utils/automation/doXenoRefGene.pl - lines changed 36, context: html, text, full: html, text

4107737d94aaba086feffab7fa22ea7efd918d56 Tue Jul 6 12:38:07 2021 -0700

now delivering GTF files for gene tracks in buildDir/genes/ refs #27512
- src/hg/makeDb/doc/asmHubs/mkSymLinks.pl - lines changed 2, context: html, text, full: html, text