Commits for braney

v420_preview2 to v420_base (2021-08-30 to 2021-09-07) v420

8943b642b61d368bbd4833fe55a39207ec4ecaa8 Tue Aug 31 16:26:16 2021 -0700

• forked pipeline() process shouldn't call the atexit() routines, so call _exit() rather than exit()
  • src/lib/pipeline.c - lines changed 1, context: html, text, full: html, text

21ecc89a7989c1f60d6da19c6e9eeb2dbe65525d Wed Sep 1 12:07:30 2021 -0700

• update to blastTabs to mm39 from mm10
  • src/hg/hgGene/hgGeneData/Human/hg38/otherOrgs.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/S_cerevisiae/sacCer3/otherOrgs.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildLoadOther.sh - lines changed 123, context: html, text, full: html, text

9160ba77561829b8e213058680623b63d35262dc Fri Sep 3 10:40:47 2021 -0700

• get synBlast to work with bigBed
  • src/hg/utils/automation/synBlastp.csh - lines changed 1, context: html, text, full: html, text

66b1030888d2fbc504ed737350256b20442367c7 Fri Sep 3 10:43:22 2021 -0700

• ongoing work on knownGene automation
  • src/hg/utils/otto/knownGene/buildBlast.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildCore.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildKnown.sh - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildLoadOther.sh - lines changed 114, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildMafGene.sh - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildTo.sh - lines changed 70, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/copyFilesToAssembly.sh - lines changed 2, context: html, text, full: html, text

7f7a1e6ecc12149c8e55a619ce556836fdee8ad2 Fri Sep 3 14:59:09 2021 -0700

• add sequence logos to Jaspar track
  • src/hg/hgc/bigBedClick.c - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/jaspar.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text