Commits for hiram

v422_preview to v422_preview2 (2021-10-04 to 2021-10-11) v422

280a2a6f10fd59284d182afba38fc5983dafc68f Mon Oct 4 10:26:35 2021 -0700

• updating spacing of makeDoc output no redmine
  • src/hg/utils/automation/pairLastz.sh - lines changed 3, context: html, text, full: html, text

1054d4e3c1d6bdb3d2799860d0eca70dfd35447c Mon Oct 4 10:27:27 2021 -0700

• mm39 vs. hg19 lastz/chain/net per Brian request no redmine
  • src/hg/makeDb/doc/mm39/lastzRuns.txt - lines changed 78, context: html, text, full: html, text

214027f89911627e70d5836ea64071b97487144b Mon Oct 4 12:35:07 2021 -0700

• fixup race condition to mkdir lib/MACHTYPE refs #28240
  • src/hg/lib/makefile - lines changed 4, context: html, text, full: html, text
  • src/lib/makefile - lines changed 1, context: html, text, full: html, text

9ef9b760d157a71c1ab0564b5b5f28597b015931 Mon Oct 4 14:23:58 2021 -0700

• no need to show error when looking for rmsk and it does not exist no redmine
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 5, context: html, text, full: html, text

9d58bbf088d5889d9274d454a3fc6d1ecdf9ec0e Mon Oct 4 15:19:23 2021 -0700

• add note about invertebrate group containing more than just animals no redmine
  • src/hg/makeDb/doc/asmHubs/hubIndex.pl - lines changed 4, context: html, text, full: html, text

6e1e750b5deddc08621ca5902d2cc8201a6965fc Wed Oct 6 13:33:36 2021 -0700

• adding two tardigrade genome assemblies per Max request no redmine
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 2, context: html, text, full: html, text

fae06a8f022bd67553c9e254fb1ecf98ca8d3e03 Wed Oct 6 14:12:49 2021 -0700

• fixup comment no redmine
  • src/hg/makeDb/doc/mm39/lastzRuns.txt - lines changed 3, context: html, text, full: html, text

9e7949fb6dd9cbb6379327b52e762cdecde5341a Thu Oct 7 09:47:15 2021 -0700

• finish off lastz/chain/net procedure no redmine
  • src/hg/makeDb/doc/asmHubs/lastzRuns.txt - lines changed 14, context: html, text, full: html, text
  • src/hg/utils/automation/pairLastz.sh - lines changed 3, context: html, text, full: html, text

50bd805b6eddedc25a9db61f372f483319ba2987 Fri Oct 8 15:11:25 2021 -0700

• adding tardigrade and bacteria genomes requesed by users refs #28303
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 4, context: html, text, full: html, text

d2ea6b76f1d69dafb40ebdb6348fb7fbcc5c6e49 Fri Oct 8 15:12:35 2021 -0700

• manage the names for single sequences in bacteria refs #28303
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 2, context: html, text, full: html, text