Commits for hiram

v423_preview2 to v423_base (2021-11-01 to 2021-11-09) v423

7b52d31632f9b473eba9939d2d30ce703e401553 Fri Oct 29 15:58:44 2021 -0700

• lastz chainNet on GCF_002742125.1 Ramboullet sheep refs #28409
  • src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra - lines changed 43, context: html, text, full: html, text

bcf35aa04eb90031bdf817fec6e4262481e77fd8 Mon Nov 1 10:31:15 2021 -0700

• no need to run WM without the sdust option that other result is never used no redmin
  • src/hg/utils/automation/doWindowMasker.pl - lines changed 35, context: html, text, full: html, text

50367dd2101774592c5367431d32a7b9ef5c17ab Fri Nov 5 14:53:51 2021 -0700

• fixup integer overflow error which eliminated CpG detection in high GC content regions refs #26707
  • src/utils/cpgIslandExt/cpg_lh.c - lines changed 2, context: html, text, full: html, text

e6e7f4271023cbd1bf9521e1b9dd0548c65773aa Mon Nov 8 12:05:41 2021 -0800

• adding in 97 Lepidoptera assemblies for David Thybert alignment project no redmine
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 96, context: html, text, full: html, text

47a79f098982f6f7b6511f1e2ea8435eb3b21778 Mon Nov 8 12:14:16 2021 -0800

• adding in 97 Lepidoptera assemblies for David Thybert alignment project no redmine
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 96, context: html, text, full: html, text