Commits for chmalee

v424_preview2 to v424_base (2021-11-22 to 2021-12-06) v424

cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700

• Add -fno-common to library makefiles to fix common extern variable definition errors
  • src/hg/hgGene/hgGene.h - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.h - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/rnaPLFoldTrack.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 4, context: html, text, full: html, text
  • src/hg/hgc/hgdpClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/lowelab.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgc/parClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/parClick.h - lines changed 11, context: html, text, full: html, text
  • src/hg/hubApi/dataApi.h - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hapmapSnps.h - lines changed 2, context: html, text, full: html, text
  • src/hg/inc/loweutils.h - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/loweutils.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 4, context: html, text, full: html, text
  • src/inc/common.mk - lines changed 1, context: html, text, full: html, text
  • src/lib/makefile - lines changed 4, context: html, text, full: html, text

f7c6d00dc60736e0f6c9663209a86033ced35be9 Mon Nov 22 10:44:02 2021 -0800

• Merge branch 'master' into chmalee_fixExternsSquash

df64dbe534feb014891a42b81fd11b8f395ef881 Mon Nov 22 13:19:57 2021 -0800

• Fix missing extern declaration in pslCDnaFilter
  • src/hg/pslCDnaFilter/globalNearBestFilter.h - lines changed 1, context: html, text, full: html, text

d17c507ba014280326dcbf54a3bbfd8e5f9989db Mon Nov 8 16:07:32 2021 -0800

• Fix pipeline timeout to properly ignore signal() returning non-zero, except in the case of a real error. Also get hgHubConnect to properly time out on hubCheck taking too long
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 24, context: html, text, full: html, text
  • src/lib/pipeline.c - lines changed 1, context: html, text, full: html, text

971b95067e2e05fb43a609875eff37500127bdc0 Tue Nov 23 10:07:17 2021 -0800

• Explicitly add -fcommon gcc option to blatz build, I don't want to mess with an old program like that
  • src/blatz/makefile - lines changed 2, context: html, text, full: html, text

ea752b0065368a5b24ba8dac7d28819b0869d873 Fri Dec 3 14:55:35 2021 -0800

• Fix some of the hubCheck timeout error messages as requested by qa, refs #28412
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 8, context: html, text, full: html, text

9e45eee991a29ec4b3c8e476ed1a40996607ed59 Mon Dec 6 10:10:38 2021 -0800

• v424 final build, refs #28521
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

9b267b40b1b9a6818886f2b51cf9d69b0e8b7d9e Mon Dec 6 10:20:29 2021 -0800

• New version number v424
  • src/hg/inc/versionInfo.h - lines changed 2, context: html, text, full: html, text
  • src/inc/srcVersion.h - lines changed 2, context: html, text, full: html, text