Commits for kent

v424_preview2 to v424_base (2021-11-22 to 2021-12-06) v424

ec3d64b274d7d36030ea54d86ecdb96afc18f35d Wed Aug 25 10:56:56 2021 -0700

• Updating path to cell browser matrix and meta.tsv.
  • src/hg/makeDb/doc/hg19.txt - lines changed 3, context: html, text, full: html, text

183696cf2ea83033b4bf4a34ab1b0db38f1c4567 Mon Nov 15 15:47:14 2021 -0800

• Moving bed12Source.c from cgilib to lib since it is not propriatary, and a HCA thing wanted to use it.
  • src/hg/cgilib/bed12Source.c - lines changed 214, context: html, text, full: html, text
  • src/hg/cgilib/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/bed12Source.c - lines changed 214, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text

0e9604766086b49eecef30226e15cea726cc14b6 Wed Nov 24 14:03:14 2021 -0800

• Updated usage message, which was missing a new column.
  • src/hca/hcaUnifyMatrix/hcaUnifyMatrix.c - lines changed 3, context: html, text, full: html, text

9e6c57d6f56f6dc6e8d5d981fa097b6880787730 Wed Nov 24 14:09:51 2021 -0800

• Adding support for filtering based on facets selected in the details/UI page.
  • src/hg/hgTracks/barChartTrack.c - lines changed 28, context: html, text, full: html, text

7dc5c592016eec0058920fb4e9b596c221edea0b Wed Nov 24 14:13:44 2021 -0800

• Adding first cut of tabulaSapiens track.
  • src/hg/makeDb/trackDb/human/hg38/tabulaSapiens.ra - lines changed 41, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

080aff3c9de71d3a3ca71a0ae1bf758fe3d60208 Wed Nov 24 14:15:48 2021 -0800

• Adding dotForUserEnd() function to help avoid unclosed lines of dots.
  • src/inc/obscure.h - lines changed 3, context: html, text, full: html, text
  • src/lib/obscure.c - lines changed 6, context: html, text, full: html, text

3287d90dcd392481a06ee003ffd23b7d5e6b8b30 Wed Nov 24 14:17:02 2021 -0800

• Adding trailing end of line to I'm-alive dots.
  • src/lib/sparseMatrix.c - lines changed 1, context: html, text, full: html, text

5864663e6eb6f35d2f994a33e18494d1f393fc25 Wed Nov 24 14:17:48 2021 -0800

• Added -sort option.
  • src/tabFile/tabToTabDir/tabToTabDir.c - lines changed 8, context: html, text, full: html, text

b43226fefc74237ea63a4c28e43197cfd183bbad Wed Nov 24 14:19:04 2021 -0800

• Further one-shot hacking in wrangling adipose dataset.
  • src/oneShot/adiposeRelabelImmune/adiposeRelabelImmune.c - lines changed 12, context: html, text, full: html, text

57c27eb76af85e951c3586834eef4499f628ac5f Wed Nov 24 14:21:01 2021 -0800

• One shot self-imposed- data problem fixer. Nothing to see here.
  • src/hg/oneShot/demergeSingle/demergeSingle.c - lines changed 12, context: html, text, full: html, text

9bd482febef48bfcd97f2f06382170a47b21c4b8 Wed Nov 24 14:22:00 2021 -0800

• Freen tries to test the csv code.
  • src/hg/oneShot/freen/freen.c - lines changed 179, context: html, text, full: html, text

60eff7582a4de0728a2f2d7b9d1cd417502e8ed3 Wed Nov 24 14:36:10 2021 -0800

• Fix merge conflict from both adding new stuff at same place.
  • src/hg/lib/bed12Source.c - lines changed 214, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/utils/otto/otto.crontab - lines changed 88, context: html, text, full: html, text

05a94d31f6ff2235ef85a349732500e8b6b40564 Mon Nov 29 10:48:06 2021 -0800

• First cut at a join utility that is a bit slower but more careful than Unix's.
  • src/tabFile/tabJoin/makefile - lines changed 3, context: html, text, full: html, text
  • src/tabFile/tabJoin/tabJoin.c - lines changed 98, context: html, text, full: html, text

b6bccf8be481dbdbe6ead2a8cda1b8312a405008 Mon Nov 29 12:20:47 2021 -0800

• Adding simple test case.
  • src/tabFile/tabJoin/expected.out - lines changed 4, context: html, text, full: html, text
  • src/tabFile/tabJoin/test1.tsv - lines changed 4, context: html, text, full: html, text
  • src/tabFile/tabJoin/test2.tsv - lines changed 4, context: html, text, full: html, text

4604bbe49ece6900be69ff88f34522738dafa36c Mon Nov 29 12:24:50 2021 -0800

• Improving error messages.
  • src/tabFile/tabJoin/tabJoin.c - lines changed 3, context: html, text, full: html, text

b9a0555ef32aa8101790c4a92c736a7ddd58ffbd Mon Nov 29 12:48:16 2021 -0800

• Making it so that you can use a field index as well as field name.
  • src/tabFile/tabJoin/makefile - lines changed 4, context: html, text, full: html, text
  • src/tabFile/tabJoin/tabJoin.c - lines changed 36, context: html, text, full: html, text

a6f043714a1915dd4850ea3caebe2c6cee01217f Mon Nov 29 16:24:30 2021 -0800

• Letting columns in faceted bar charts be wider before the ... kicks in.
  • src/hg/hgc/facetedBar.c - lines changed 1, context: html, text, full: html, text

2a0e085ee206ef0f9ee07af1b46e3ca90ccbbee0 Mon Nov 29 16:26:01 2021 -0800

• Updating colors and labels on Tabula sapiens. Adding tissue/cell_type substrack.
  • src/hg/makeDb/trackDb/human/hg38/tabulaSapiens.ra - lines changed 25, context: html, text, full: html, text