File Changes for angie

src/hg/hgPhyloPlace/runUsher.c
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  22d4d158752454901bc830d09c32e5b0411a1def Fri Nov 12 17:17:49 2021 -0800
  Ignore new usher output file placement_stats.tsv.
src/hg/utils/otto/nextstrainNcov/nextstrain.py
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  31fcce743b506baaad63423b3f126064a2b0dc56 Fri Nov 12 13:57:59 2021 -0800
  Update to latest clade coloring & names.
src/hg/utils/otto/sarscov2phylo/getNcbi.sh
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  22e94ffbe044de3b15c736105afa2260196e752b Fri Nov 12 13:59:18 2021 -0800
  biosample.jsonl from NCBI Datasets is stable & complete -- finally I can get rid of the redundant EUtils fetching of BioSample.
src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv
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  7787c0ece98e4377fef9ef76f6873d954d8d7ea8 Fri Nov 12 13:34:42 2021 -0800
  Added lineage B.1.640 (pango-designation release v1.2.94).
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  1d2159abdf40a691de6d3d789781e44b7b3dd167 Fri Nov 12 14:01:19 2021 -0800
  Mask site 28271 in AY lineages because it's deleted (but inconsistently detected) in Delta.
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  40c5f81c53408b270b7b5d991f50b9f7df0ad3b3 Mon Nov 15 09:26:38 2021 -0800
  Cleanup: Remove G24410N (now masked because it's in Problematic Sites). Remove sites masked in maskDelta.sh from AY.* lineages.