Commits for braney

v424_preview to v424_preview2 (2021-11-15 to 2021-11-22) v424

45eded6990186ff6cb0c8674c9265bfd6fc90390 Mon Nov 15 15:17:29 2021 -0800

• some tweaks to allow bigMaf's that are children to be output as MAF in table browser
  • src/hg/hgTables/maf.c - lines changed 3, context: html, text, full: html, text

7e5840e03baf4a7b7c198016c393d0b86f7b72b6 Tue Nov 16 15:25:19 2021 -0800

• allow hgc pages on chains to provide a link to the "other" browser if the other assembly is an unattached genark assembly hub
  • src/hg/hgc/hgc.c - lines changed 35, context: html, text, full: html, text
  • src/hg/inc/genark.h - lines changed 101, context: html, text, full: html, text
  • src/hg/inc/hubConnect.h - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/genark.c - lines changed 47, context: html, text, full: html, text
  • src/hg/lib/genark.h - lines changed 86, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 17, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text

6aaa041c6e3cea383a6ca3275144f6998613cec6 Thu Nov 18 17:34:47 2021 -0800

• be a lot smarter about how we parse bigMaf files. We were opening the file on every bed item, which for bigMaf is about one per base refs #28534
  • src/hg/hgTables/maf.c - lines changed 20, context: html, text, full: html, text

0db712dee5613afb52c35deaad27ec64c0eb4646 Fri Nov 19 12:17:51 2021 -0800

• move UCSC Genes back into place
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 3, context: html, text, full: html, text