Commits for kent

v425_preview2 to v425_base (2021-12-20 to 2022-01-10) v425

9bd28250f857bd08f2359488cd0116393317b91a Tue Dec 21 12:00:50 2021 -0800

• First cut at parallelizing this. It's going about 3x as fast.
  • src/hg/makeDb/trackDb/human/hg38/hippocampusAyhan.ra - lines changed 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/toothKrivanek.ra - lines changed 42, context: html, text, full: html, text
  • src/utils/matrixClusterColumns/matrixClusterColumns.c - lines changed 267, context: html, text, full: html, text

92f77f7bef111331d3c88d14cf98ef2e64c765f8 Tue Dec 21 12:06:48 2021 -0800

• Improved a structure name and removed some debugging. Added some comments.
  • src/utils/matrixClusterColumns/matrixClusterColumns.c - lines changed 23, context: html, text, full: html, text

c9199234bbc31055553ff6303cdaf338bc647f3a Tue Dec 21 14:09:19 2021 -0800

• Fixing typo and documenting new lookup function
  • src/lib/strex.doc - lines changed 8, context: html, text, full: html, text

c01f112aa3087b09f57757246028b93babb2c335 Tue Dec 21 14:10:25 2021 -0800

• Adding new built-in function lookup(string, twoColFile)
  • src/lib/strex.c - lines changed 42, context: html, text, full: html, text

fee62066b22cf401cc44c8d012b165bc89466d69 Tue Dec 21 14:12:12 2021 -0800

• Just adding some testing notes on speed that record observation parallelization is about 2x as fast on gzipped input, 3x on ungzipped input.
  • src/utils/matrixClusterColumns/speed_notes - lines changed 7, context: html, text, full: html, text

043555f1c6f76c2ae2f64a9bac67e21cf5c013f2 Tue Dec 21 14:15:55 2021 -0800

• Adding toothKrivaneck and hippocampusAyhan datasets.
  • src/hg/makeDb/trackDb/human/hg38/hippocampusAyhan.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/toothKrivanek.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

024b985abff094bf56f3a801de99feca2de48534 Wed Dec 22 16:19:08 2021 -0800

• Second (first meaningful) cut at details html page for singleCellMerged.
  • src/hg/makeDb/trackDb/human/hg38/singleCellMerged.html - lines changed 38, context: html, text, full: html, text

90c9cf6af590a7936f3d0522c39716016e5c4f1e Wed Dec 22 21:35:18 2021 -0800

• Making both droplet and facs arms have facets_usual and facets_details views that are both mergable. Cleaned up other relics of pre-mergable tracks from /gbdb.
  • src/hg/makeDb/trackDb/mouse/mm10/tabulaMurisSenis.ra - lines changed 16, context: html, text, full: html, text

1a9a95aaa060347e603599778834cfb48cb00f2d Fri Dec 24 12:52:04 2021 -0800

• Getting rid of unused tracks again.
  • src/hg/makeDb/trackDb/human/hg38/tabulaSapiens.ra - lines changed 35, context: html, text, full: html, text

c9cbc02d602f92f2a1175a2e2666d9626f2d991c Tue Jan 4 13:20:24 2022 -0800

• Making it show 7 items per facet before unfolding rather than 6, so as to be consistent with hgTrackUi.
  • src/hg/hgc/facetedBar.c - lines changed 1, context: html, text, full: html, text

4cfe50ad2c533ab2b51e09dd1c50dc422c59223d Tue Jan 4 13:21:24 2022 -0800

• Only show the number by the merge if not all are being merged
  • src/hg/lib/tablesTables.c - lines changed 3, context: html, text, full: html, text