Commits for angie

f587c6cd4ffa90b371583bbbf80373172b9ca885 Mon Mar 28 16:22:32 2022 -0700

Added some more proposed recombinant lineages.
- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 10, context: html, text, full: html, text

55553375e86d3efd4ab9dfcc153af6cf4b533b6c Mon Mar 28 20:34:31 2022 -0700

Added AY.29.2, recombinant lineages X[G-L] and BA.2.[4-8] -- pango-designation releases v1.2.134 - v1.2.136.
- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 11, context: html, text, full: html, text

3785ce567802bded5290ea2c462a80e82c2b72ca Tue Mar 29 15:07:38 2022 -0700

Mask a couple sites for BA.1.1.1 that seem especially reversion-prone. Add proposed recombinant from pango-designation issue 472.
- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 2, context: html, text, full: html, text

fe18535e3c8f3cb73f5e1255ab80365ea3d2d65c Tue Mar 29 16:45:43 2022 -0700

Added BA.1.18 and BA.1.19 -- pango-designation v1.2.137
- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 2, context: html, text, full: html, text

72fbe4500f9be4c2fc30cf70cd51663f64b56059 Thu Mar 31 22:39:33 2022 -0700

Added AY.112.2, B.1.641 and renamed proposed472 to XM -- pango-designation releases v1.2.138-139
- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 3, context: html, text, full: html, text

7d5aa04e69f02d055862f06cb8ed6244d41f18f3 Fri Apr 1 17:14:54 2022 -0700

Added new lineages BA.1.17.2, BA.2.9, BA.2.10, BA.2.3.1, and renamed proposed480 to XN, proposed481 to XP, proposed468 to XQ, proposed469 to XR and proposed471 to XS -- pango-designation v1.2.140-141
- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 9, context: html, text, full: html, text