Commits for braney

v429_preview2 to v429_base (2022-03-28 to 2022-04-04) v429

e469259cebde62bf0bf53f582f7f69ba9a22aebc Tue Mar 29 12:28:22 2022 -0700

• allow big* tracks with only a bigDataUrl to be used in Extended DNA coloring page
  • src/hg/hgc/hgc.c - lines changed 33, context: html, text, full: html, text
  • src/hg/inc/featureBits.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/featureBits.c - lines changed 5, context: html, text, full: html, text

6c2bc6c25f4bffc4f9b31ae43ec71462faee80d9 Tue Mar 29 12:55:57 2022 -0700

• accept pgSnp custom tracks in extended DNA color dialog
  • src/hg/hgc/hgc.c - lines changed 2, context: html, text, full: html, text

3445474d3a3568bf41d3f9e9fce71fc54a795bd3 Tue Mar 29 15:42:24 2022 -0700

• add missing "table" record to knownGene which tells hgTables to use that table instead of the bigGenePred
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra - lines changed 1, context: html, text, full: html, text

00ed3e61b7e4a4ddca896ff1671ab0bd664a6e85 Tue Mar 29 16:04:50 2022 -0700

• rewind mm39 on dev back to VM27 for knownGene, fix problem with hgTables using the wrong table
  • src/hg/makeDb/trackDb/mouse/mm39/knownGene.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 3, context: html, text, full: html, text

e1f7896a08fb147d663f3a8339f1ad5aea037729 Tue Mar 29 17:04:52 2022 -0700

• make svgBarChart and multiRegionButtonTop be on by default
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/barChartClick.c - lines changed 1, context: html, text, full: html, text

3d865319000102f6164e546ddd9c959f67c664ce Wed Mar 30 13:09:30 2022 -0700

• add chromAlias support to bam support
  • src/hg/hgTables/bam.c - lines changed 14, context: html, text, full: html, text
  • src/hg/hgTracks/bamTrack.c - lines changed 14, context: html, text, full: html, text
  • src/hg/hgc/bamClick.c - lines changed 20, context: html, text, full: html, text

03e01bc588d0e171fdb2487dc036e8c481aad4e8 Wed Mar 30 16:47:50 2022 -0700

• fix bug I introduced last year that breaks ByRange and Min and Max with bigBed filters.
  • src/hg/lib/hui.c - lines changed 7, context: html, text, full: html, text

0607b89d9588aa28b12dc406d22331e3e8b013d7 Fri Apr 1 09:09:51 2022 -0700

• sometimes the maf summary table deletes the version numbers from the "other" database. If we don't find the component with a dot, look for one without it
  • src/hg/hgTracks/wigMafTrack.c - lines changed 11, context: html, text, full: html, text