Commits for braney
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v432_preview to v432_preview2 (2022-05-23 to 2022-05-31) v432
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14374de7f70bbc06bdb97d6a07cd0f896575e9e3 Mon May 23 10:20:13 2022 -0700
- fix weird bug where HTML file didn't exist, but there was a directory of
that name
- src/hg/makeDb/hgTrackDb/hgTrackDb.c - lines changed 1, context: html, text, full: html, text
8526b4c65858c0f24dec1f4df30b4cc592df1df2 Mon May 23 10:21:57 2022 -0700
- working on porting t2t hub to curated status
- src/hg/makeDb/doc/chm13/initial.txt - lines changed 33, context: html, text, full: html, text
eb0b82122000432228d838bcd9755085f40278f9 Mon May 23 17:21:24 2022 -0700
- add knowGeneVM29 to mm39
- src/hg/makeDb/trackDb/mouse/mm39/knownGene.alpha.html - lines changed 142, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm39/knownGene.alpha.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 3, context: html, text, full: html, text
e5269f4f19e072d14e01eb2b4e53dccd32e04aef Tue May 24 16:20:28 2022 -0700
- fixes problem where interact clicks don't grok chromAlias refs #29453
- src/hg/hgc/interactClick.c - lines changed 3, context: html, text, full: html, text
d26fd993b377f1d3426fbedba35bd98d2ba5c3da Tue May 24 16:25:26 2022 -0700
- fix problem with hgFind not using chromAlias refs #29447
7b6ed6442a14f0d521f0f4dcc6e2b248094584a0 Wed May 25 08:25:50 2022 -0700
- fix crash I introduced yesterday
aa4e38f17873a04c9bdf37d15ea7889ca61c32a2 Wed May 25 08:30:40 2022 -0700
- thrashing with this hgFind fix... sigh. This should put us back to
where we started
1f76fce263862dbc1f78f22b0d3152b6979e2a40 Wed May 25 17:07:12 2022 -0700
- Let's try this again. Do chrom alias mapping on hgFind searches
3c2ed53526889f9cd347ade7e1f71d35aa542cbb Wed May 25 17:54:06 2022 -0700
- on assembly hubs, make sure searches work on both the tracks in the
assembly hub AND attached track hubs
dc33f1e79e44f3d7ac0c8bc63c3c43847325c548 Thu May 26 12:40:57 2022 -0700
- add a new click handler for TOGA tracks from Michael Hiller's group
- src/hg/hgc/togaClick.c - lines changed 335, context: html, text, full: html, text
- src/hg/hgc/togaClick.h - lines changed 39, context: html, text, full: html, text
05eb41c63af8ccd369f76b022d3cf1faab5543c2 Thu May 26 16:25:07 2022 -0700
- changes to support curated hubs
- src/hg/inc/hubConnect.h - lines changed 3, context: html, text, full: html, text
- src/hg/lib/hubConnect.c - lines changed 41, context: html, text, full: html, text
- src/hg/makeDb/hgTrackDb/hgTrackDb.c - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/loadTracks - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/makefile - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDbToTxt/trackDbToTxt.c - lines changed 3, context: html, text, full: html, text
d0dbf26fa75c67764c6cb8cb3aa370cdf62f1e17 Fri May 27 13:13:47 2022 -0700
- fix drag scroll problem with chromAuthority is not the native system
- src/hg/hgTracks/imageV2.c - lines changed 2, context: html, text, full: html, text
d7228ab745723e138b488ee17384286c09c60469 Fri May 27 14:41:09 2022 -0700
- watch out for NULL when looking into aliases
- src/hg/hgTracks/imageV2.c - lines changed 7, context: html, text, full: html, text
8c369a9c3f1fc3db3f3cd305eb7fd774fa20c64d Sun May 29 16:55:15 2022 -0700
- commit test version of chm13 curated hub
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.assembly.html - lines changed 33, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.augustus.html - lines changed 106, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.catLiftOffGenesV1.html - lines changed 104, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.censat.html - lines changed 34, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.chainNet.html - lines changed 183, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.clinVar20220313.html - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.cpgIslands.html - lines changed 78, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.dbSNP155.html - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.description.html - lines changed 131, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.encode.html - lines changed 41, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.gc5Base.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.gwasSNPs2022-03-08.html - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.hgCactus.html - lines changed 44, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.hgLiftOver.html - lines changed 250, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.hgUnique.html - lines changed 45, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.microsatellites.html - lines changed 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.proseq.html - lines changed 57, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.rdnaModel.html - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.refSeqComposite.html - lines changed 186, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.repeatMasker.html - lines changed 149, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.rnaseq.html - lines changed 68, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.sedefSegDups.html - lines changed 43, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.sgdpCopyNumber.html - lines changed 33, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.simpleRepeat.html - lines changed 48, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.t2tRepeatMasker.html - lines changed 230, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.t2tRepeatMasker.html.0 - lines changed 10911, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.tanDups.html - lines changed 101, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.windowMasker.html - lines changed 34, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/html/GCA_009914755.4_T2T-CHM13v2.0.xenoRefGene.html - lines changed 88, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/trackDb.ra - lines changed 6082, context: html, text, full: html, text
e5d37503f652d47a0d2e5c6a03562cdf6442736b Mon May 30 09:55:25 2022 -0700
- some tweaks to chm13 to get searchTrix to work
- src/hg/makeDb/doc/chm13/initial.txt - lines changed 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/chm13/trackDb.ra - lines changed 11, context: html, text, full: html, text
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