Commits for hiram
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v434_preview2 to v434_base (2022-07-11 to 2022-07-18) v434
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1539b78400cd49aec953ea11c9db24e75a4e1f7a Mon Jul 11 12:41:59 2022 -0700
- catch up GenArk lists with VGP lists refs #29545
- src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 56, context: html, text, full: html, text
c519723f63e27a28fbc3191e3c9971630a16d883 Mon Jul 11 16:18:52 2022 -0700
- catch up GenArk with VGP listings refs #29545
- src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 56, context: html, text, full: html, text
742d5c7fccb860640b4421f3e81459c71662276c Mon Jul 11 17:07:14 2022 -0700
- catching up GenArk listings with VGP listingf refs #29545
- src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 39, context: html, text, full: html, text
f63a5430d53d9515f12484904994b7aadedcd6a0 Mon Jul 11 21:01:01 2022 -0700
- catching up GenArk with VGP refs #29545
- src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 19, context: html, text, full: html, text
2ad94b480e48650b02c48afbfa5b7d16e191b547 Mon Jul 11 21:33:11 2022 -0700
- catching up GenArk with VGP refs #29545
- src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 2, context: html, text, full: html, text
8ce4fceea6c2a4286bca7d1843c77ec9fe70238d Mon Jul 11 21:46:08 2022 -0700
- catching up GenArk with VGP refs #29545
- src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 5, context: html, text, full: html, text
6f9fe204e90acfa0ce38667facc41cf1685622e7 Thu Jul 14 15:53:42 2022 -0700
- adding an old platypus assembly to run up a liftOver to a newer assembly refs #29753
- src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 1, context: html, text, full: html, text
b9a7a8323ab45f2ba91c19546cfcbec5c9df0f28 Thu Jul 14 18:04:56 2022 -0700
- catch up VGP with new and updated assemblies already in GenArk refs #29545
- src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 24, context: html, text, full: html, text
d061e1615139355c2ba32dedf5c99e0101ffb23d Thu Jul 14 18:23:48 2022 -0700
- correct a name spelling refs #29545
- src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 1, context: html, text, full: html, text
a48630858b24b1a4dacf2077c92a44202b31b0b1 Thu Jul 14 19:21:55 2022 -0700
- catch up VGP with new and updated assemblies already in GenArk refs #29545
- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt - lines changed 24, context: html, text, full: html, text
95a16d875326cc83a774eb9f52a11c003cba36d6 Fri Jul 15 11:00:46 2022 -0700
- eliminate obsolete trimmedOrgName variable and correct date discovery refs #29734
- src/hg/makeDb/doc/asmHubs/mkGenomes.pl - lines changed 13, context: html, text, full: html, text
439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
- updated to match current conditions in these tests refs #29729
- src/hg/hubApi/tests/expected/list02.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/list03.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/list08.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/list09.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/schema03.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/schema06.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/schema10.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/test0.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/test41.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/test48.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/test49.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/hubApi/tests/expected/test50.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
a3ca1677f19ad5f44f8c3cd694e226d035771ab7 Sat Jul 16 14:42:40 2022 -0700
- capture hub static text files refs #29762
- src/hg/makeDb/doc/hs1/hubTextFiles/hubAndGenome.txt - lines changed 27, context: html, text, full: html, text
c82feb4ba334e46ffe8f4f71f0470ef751cf981b Sat Jul 16 15:09:59 2022 -0700
- gateway description page from hgdownload hub needs to be edited refs #29762
- src/hg/makeDb/doc/hs1/hubTextFiles/hs1.description.html - lines changed 131, context: html, text, full: html, text
12aaa9b4b1645f687d42e16c88e66e653e38ca9a Sat Jul 16 15:10:40 2022 -0700
- better names and correct dynablat definition refs #29762
- src/hg/makeDb/doc/hs1/hubTextFiles/hubAndGenome.txt - lines changed 8, context: html, text, full: html, text
4f1ef650083f68151d83626aa7ca30dc87efc687 Mon Jul 18 09:18:00 2022 -0700
- html and text files here for the hs1 hub refs #29762
- src/hg/makeDb/trackDb/human/hs1/description.html - lines changed 131, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hs1/hubAndGenome.txt - lines changed 27, context: html, text, full: html, text
2b22cb38cc9a41ec95eb8ceea4dbc6e1205aa707 Mon Jul 18 09:18:48 2022 -0700
- moved files to trackDb/human/hs1 refs #29762
- src/hg/makeDb/doc/hs1/hubTextFiles/hs1.description.html - lines changed 131, context: html, text, full: html, text
- src/hg/makeDb/doc/hs1/hubTextFiles/hubAndGenome.txt - lines changed 27, context: html, text, full: html, text
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