All File Changes

v435_preview2 to v435_base (2022-08-01 to 2022-08-08) v435

• src/hg/hgTracks/bigRmskTrack.c
  • lines changed 34, context: html, text, full: html, text
    dfb8e59201a2b43e28b6db8bf04c020f1bce6ac6 Fri Aug 5 17:22:19 2022 -0700
    fix bigRmsk label being cut off in full mode (#29845)
• src/hg/hgc/gencodeClick.c
  • lines changed 1, context: html, text, full: html, text
    07b9fe3f899658bde54ce0c3583b74b0bd7f272b Mon Aug 1 18:05:51 2022 -0700
    change GENCODE click to use new form of PDB link, due to older form now longer working
  • lines changed 2, context: html, text, full: html, text
    3e38c690e11c057380d833734a7d906464f0e8bb Tue Aug 2 09:38:53 2022 -0700
    adjusted link to APRIS to avoid broken redirect
• src/hg/htdocs/FAQ/FAQdownloads.html
  • lines changed 28, context: html, text, full: html, text
    c717ea66509b0427bf27edc497f1c7f7d2e9ea95 Mon Jul 11 12:52:35 2022 -0700
    Adding section about genArk to the page, no RM
• src/hg/htdocs/goldenPath/help/bigRmsk.html
  • lines changed 13, context: html, text, full: html, text
    b7d1897d8117b9a1e39f88710af76fff8172fed6 Wed Aug 3 15:34:31 2022 -0700
    Proofreading the doc for #29356
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 9, context: html, text, full: html, text
    3c6988eb39c279b13071dc97e18fa7891ecdf16f Mon Jul 25 12:02:05 2022 -0700
    Slight edits for clarity, refs #25116
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    baeb88c428b3e0aa041a7c97740b6e28d5db8b25 Mon Aug 8 10:30:25 2022 -0700
    New version number v435
• src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh
  • lines changed 2, context: html, text, full: html, text
    e6c137cda8bc694f252af4cd9f6a93a301bb6207 Tue Aug 2 12:59:47 2022 -0700
    mammal assembly limit lower to 10 valid tracks refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    136965ec5b758f4432f4b59c0f22e203aaf41d2c Tue Aug 2 12:41:51 2022 -0700
    adding two gayal assemblies per user request refs #29545
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    97d5d4bda93cf1cadb3e066127c653e0d353e79d Mon Aug 1 17:21:46 2022 -0700
    Removing release tag to update the problematic regions track, refs #29685
• src/hg/makeDb/trackDb/human/hs1/description.html
  • lines changed 60, context: html, text, full: html, text
    7de534c57d4e3f430669f58f9b17b6bd62c77252 Fri Aug 5 16:40:42 2022 -0700
    fixup URL refererences for download files refs #29762
  • lines changed 3, context: html, text, full: html, text
    eeb78423289584e011bc881a3461b4ffb8e90645 Fri Aug 5 16:47:33 2022 -0700
    correct back slash on command line gfClient examples refs #29762
  • lines changed 1, context: html, text, full: html, text
    a2663cfa5472e93c35ad611b78c50e0ea56048db Fri Aug 5 17:00:29 2022 -0700
    eliminate reference to "hub" directory refs #29762
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    df455399183c236fe6517b96f1ec3ffde7d6186e Tue Aug 2 11:54:25 2022 -0700
    Feedback from CR, refs #29831
• src/hg/makeDb/trackDb/mouse/cloneEndSuper.html
  • lines changed 15, context: html, text, full: html, text
    db872ad0e2ac111a8c955ad1a5658ee53d3eb2ab Fri Aug 5 11:25:08 2022 -0700
    Replacing links with the resources a user shared and removing library name links, refs #29824
• src/hg/utils/automation/asmHubRepeatMasker.sh
  • lines changed 0, context: html, text, full: html, text
    4b5dc851270e8897bb5035100bcf069effdf5745 Tue Aug 2 12:37:23 2022 -0700
    correctly indent a block of code refs #29796
• src/hg/utils/automation/asmHubTrackDb.sh
  • lines changed 1, context: html, text, full: html, text
    decbe499b06103596243d27e31a49cff37f5511f Tue Aug 2 12:40:35 2022 -0700
    correctly zcat the correct file sorted.fa.out.gz refs #29545
• src/inc/srcVersion.h
  • lines changed 1, context: html, text, full: html, text
    baeb88c428b3e0aa041a7c97740b6e28d5db8b25 Mon Aug 8 10:30:25 2022 -0700
    New version number v435
• src/userApps/fetchKentSource.sh
  • lines changed 2, context: html, text, full: html, text
    6d2579c77a8eb46b0d574a4b121b09b69fb1b42c Tue Aug 2 14:12:51 2022 -0700
    add dbDbToHubTxt and trackDbToTxt to fetchKentSource
• src/utils/bedSingleCover.pl
  • lines changed 5, context: html, text, full: html, text
    2447f79454d20c9ffaf4a90f446a541af2b5ca7d Tue Aug 2 12:32:07 2022 -0700
    should not be outputting zero length items refs #29796
• src/utils/qa/makefile
  • lines changed 1, context: html, text, full: html, text
    d3dbea5c282df3938e4f3cceb867a637de6cdf9a Mon Aug 1 15:02:31 2022 -0700
    Adding script to makefile
• src/utils/qa/userLookup
  • lines changed 24, context: html, text, full: html, text
    06f2d398dcc75f9613f8917f5d79da0d8c06219f Mon Aug 1 14:58:57 2022 -0700
    Adding tool for user lookup on gbMembers No RM
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    907534eb671f7e22434c6fa4532a55534f309d1e Mon Aug 8 10:27:35 2022 -0700
    v435 final build, refs #29802

• lines changed: 211
• files changed: 23