File Changes for hiram

v438_preview2 to v438_base (2022-10-03 to 2022-10-10) v438

• src/hg/htdocs/images/Monkeypox_virus.jpg
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    010fc087ca305aee363153bb9d523aaad727d928 Fri Oct 7 16:58:27 2022 -0700
    monkeypox virus from NIAID Integrated Research Facility (IRF) https://www.flickr.com/photos/niaid/52103767506/ refs #29811
• src/hg/htdocs/inc/garModal.html
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    a530401a5ad42da837f0138689f123053e689191 Mon Oct 10 09:50:19 2022 -0700
    better indicate in the message that there will be a process to review the request no redmine
• src/hg/js/hgGateway.js
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    33c36db157884a27c6557ec816985dfa55675757 Wed Oct 5 22:12:02 2022 -0700
    add onclick function to buttons of class copyLink no redmine
• src/hg/makeDb/doc/asmHubs/README.txt
  • lines changed 74, context: html, text, full: html, text
    6d9006164b9b861ba1d199c9c81b6ea40ababc1c Tue Oct 4 12:26:41 2022 -0700
    update instructions to include how to add locally developed tracks to the GenArk hub
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 1, context: html, text, full: html, text
    61d34db4f91fbd325f16c3e9a5b87f66c6d4b462 Tue Oct 4 11:57:47 2022 -0700
    adding soybean legacy assembly GCF_000004515.4_Glycine_max_v2.0 per user request for a liftOver refs #30089
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    2417266c7f2ef6fbaef4f292e8d160941225911e Wed Oct 5 10:47:32 2022 -0700
    clear up confusion of invertebrates with invertebrate only need one no redmine
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    83b8b215a8fb3c86ee95b43fba845bcba93e5ed3 Wed Oct 5 15:06:35 2022 -0700
    adding assembly per user request refs #29545
• src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    83b8b215a8fb3c86ee95b43fba845bcba93e5ed3 Wed Oct 5 15:06:35 2022 -0700
    adding assembly per user request refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
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    41d12b7ab39ffce5eba5fce2715a7afbe51667d2 Tue Oct 4 18:53:05 2022 -0700
    added an obsolete soybean assembly per user request no redmine
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    61d34db4f91fbd325f16c3e9a5b87f66c6d4b462 Tue Oct 4 11:57:47 2022 -0700
    adding soybean legacy assembly GCF_000004515.4_Glycine_max_v2.0 per user request for a liftOver refs #30089
• src/hg/makeDb/trackDb/virus/mpxvRivers/html/assembly.html
  • lines changed 19, context: html, text, full: html, text
    32fcbb4a69306091132bad1cedb83084e3c146fc Fri Oct 7 17:33:09 2022 -0700
    updated text refs #29811
• src/hg/makeDb/trackDb/virus/mpxvRivers/html/cpgIslands.html
  • lines changed 2, context: html, text, full: html, text
    52f94f1f0d21752b3d8bcd3d879f2315bb2a6b96 Fri Oct 7 17:52:39 2022 -0700
    updated cpgIsland doc refs #29811
• src/hg/makeDb/trackDb/virus/mpxvRivers/html/description.html
  • lines changed 53, context: html, text, full: html, text
    fdbcbd6f5c97950df0bba8c319d026f3a61d338b Fri Oct 7 17:24:53 2022 -0700
    change hub text to zombie text refs #29811
• src/hg/makeDb/trackDb/virus/mpxvRivers/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    988fb9e9a5d07d53f4d70ff428f6e282a7587399 Fri Oct 7 17:50:28 2022 -0700
    cpgIslands recalculated refs #29811
• src/hg/utils/automation/asmHubChainNetTrackDb.sh
  • lines changed 4, context: html, text, full: html, text
    2121928a798a7119f00eb7e198bd06cf4ea36d2f Wed Oct 5 10:14:36 2022 -0700
    correctly recognize the presence of the chain net files no redmine
• src/hg/utils/automation/asmHubGatewayPage.pl
  • lines changed 2, context: html, text, full: html, text
    41e19d9efe6e606e34c4a832adc63c24ed27285b Tue Oct 4 14:26:32 2022 -0700
    beginning to add a share this link to be fixed up with the copy to clipboard functions no redmine
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    1e0a7a0350cbd56b4525ad015b783ed9e091e46d Wed Oct 5 10:01:37 2022 -0700
    adding copy link button to gateway page no redmine
  • lines changed 1, context: html, text, full: html, text
    e9df5883fdd6fc3429b95c3f0df69ffd846766b6 Thu Oct 6 09:32:29 2022 -0700
    extra space and bold the link no redmine
• src/hg/utils/automation/asmHubNcbiGene.pl
  • lines changed 27, context: html, text, full: html, text
    4951a3f2ca22c980a415c231e59958197baec741 Wed Oct 5 10:41:05 2022 -0700
    correct Gene model labels on the ncbiGene (not really NCBI gene) track no redmine
• src/hg/utils/automation/asmHubTrackDb.sh
  • lines changed 17, context: html, text, full: html, text
    4951a3f2ca22c980a415c231e59958197baec741 Wed Oct 5 10:41:05 2022 -0700
    correct Gene model labels on the ncbiGene (not really NCBI gene) track no redmine