Commits for hiram

v440_preview to v440_preview2 (2022-11-07 to 2022-11-14) v440

6ab4773bd8416a2c4442b6e2cbc96af077033383 Wed Nov 9 13:44:43 2022 -0800

• update for patch 14, turns out to be the same as before refs #29964
  • src/hg/makeDb/doc/hg38/ucscToEnsembl.txt - lines changed 276, context: html, text, full: html, text

5909d2770c119549fd088df7eb210679e6b93b27 Wed Nov 9 15:11:08 2022 -0800

• update to Ensembl v107 plus rapidRelease no redmine
  • src/hg/makeDb/doc/assemblyEquivalence/update.2022-10-18.txt - lines changed 446, context: html, text, full: html, text

811dd66056e8ee6ceca4b67ea0551a0540ded944 Thu Nov 10 11:15:09 2022 -0800

• eliminate the bit about name searching no redmine
  • src/hg/utils/automation/asmHubXenoRefGene.pl - lines changed 6, context: html, text, full: html, text

60cbd8384a71282078c4651971c1c8857aa3be23 Thu Nov 10 11:25:22 2022 -0800

• not necessary to include both Case and non case strings ix is all lower case no redmine
  • src/hg/utils/automation/xenoRefGeneIx.pl - lines changed 9, context: html, text, full: html, text

135828f0756c11a8c125d1bbef9d4839a51b44b7 Thu Nov 10 11:51:30 2022 -0800

• remove note about case sensitive gene name searchs, not necessary no redmin
  • src/hg/utils/automation/asmHubGatewayPage.pl - lines changed 1, context: html, text, full: html, text

4d648b0bb9722abbaacd781994254f1ac0b998de Fri Nov 11 10:28:10 2022 -0800

• adding a couple of assemblies per user requests refs#29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 1, context: html, text, full: html, text

e54f20a28dc5dbe09d90abb37b633be3797eb66d Fri Nov 11 10:46:27 2022 -0800

• correct label field on ncbiRefSeqOther refs #29545
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 1, context: html, text, full: html, text

0771e75d0cf20a731479d0231db8e3fd2357712a Fri Nov 11 13:00:53 2022 -0800

• new location for libmysqlclient on Mac OSX 12.6.1 Monterey arm64 arch no redmine
  • src/inc/common.mk - lines changed 5, context: html, text, full: html, text

379ce66045730c6b05a996312622b9696cfdb78b Fri Nov 11 15:52:55 2022 -0800

• more libraries for kent source build on Mac OSX Monterey arm64 machine no redmine
  • src/inc/common.mk - lines changed 11, context: html, text, full: html, text

7dbf62b3ebac4ec5f0ce9fd8c4dd8821f9c22c2c Sun Nov 13 18:39:41 2022 -0800

• closer to a legal compile on Mac OSX Monterey for arm64 architecture no redmine
  • src/inc/common.mk - lines changed 12, context: html, text, full: html, text