Commits for hiram

v440_base to v441_preview (2022-11-21 to 2022-11-28) v441

3cc17c13ddc05a2dbb8b6d1d917c56d3b829c9df Mon Nov 21 11:58:27 2022 -0800

• catching up three RefSeq VGP assemblies refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 1, context: html, text, full: html, text

22b32cdaa6887807ed99855a69b1c76dc557357b Mon Nov 21 15:02:16 2022 -0800

• updated one and added two VGP assemblies refs #29545
  • src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt - lines changed 4, context: html, text, full: html, text

696803d5e4b71ea8b2c2d7e75f655b5d6e08dca1 Wed Nov 23 11:32:46 2022 -0800

• running up an E.coli sequence per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 2, context: html, text, full: html, text

29d094212da4beb5ba75141066116a9dfaa52dbb Wed Nov 23 14:57:01 2022 -0800

• correct GCF assembly for GCA_000750555.1 for user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 1, context: html, text, full: html, text

235b09c3dbc2a911c48639c01cbfe5b3447d635f Wed Nov 23 16:21:51 2022 -0800

• fixup correct argument to sendto() function as found on BSD system on Mac laptops refs #29651
  • src/lib/rudp.c - lines changed 1, context: html, text, full: html, text