Commits for hiram

7af467d22562fa9fefb7e25165ff41068e9d73ae Mon May 8 16:52:05 2023 -0700

mistaken duplication of GCF_903992535.2_mArvAmp1.2 no redmine
- src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 1, context: html, text, full: html, text

c4c7301f19ec3f7996d7f1e94e8b165e3969640a Tue May 9 13:22:39 2023 -0700

adding a gorilla assembly from the T2T Primates project refs #29545
- src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 1, context: html, text, full: html, text

47c696264270bef1361aa36b12f3eb89e7dec4e2 Wed May 10 15:39:54 2023 -0700

adding in the HPRC computed chain tracks #refs 20508
- src/hg/makeDb/trackDb/human/chainNetHuman.ra - lines changed 881, context: html, text, full: html, text

970aa24b23d625782b7bfb9031ddecd4148f6a1d Thu May 11 13:19:42 2023 -0700

eliminate the userApps source hierarchy from tags-all to prevent the duplicate useless matches no redmine
- src/makefile - lines changed 1, context: html, text, full: html, text

a31dd85d8e1322ae12d209aca3ce09504073493e Thu May 11 13:27:58 2023 -0700

I really hate trying to read !isEmpty() when there is a prefectly good equivalent isNotEmpty() no redmine
- src/hg/lib/hubConnect.c - lines changed 8, context: html, text, full: html, text

07180b149b187970f5cb3f272c607f5b24b57dee Thu May 11 14:32:50 2023 -0700

correct hgdownload path for chromAlias and chrom.sizes file for "curated" hub refs #31257
- src/hg/lib/trackHub.c - lines changed 21, context: html, text, full: html, text

092f837bff8a9b5951f18447d8a4314169d15e46 Thu May 11 14:42:22 2023 -0700

use hDownloadsServer() to get the correct download URL refs #31257
- src/hg/lib/trackHub.c - lines changed 6, context: html, text, full: html, text

3fc35a6a1ae672294df62eeec6e0e153a39605f9 Thu May 11 15:05:52 2023 -0700

correct target=_blank on chromSizes and chromAlias URLs on "sequence" page refs #31257
- src/hg/hgTracks/hgTracks.c - lines changed 4, context: html, text, full: html, text

1f6cee9b82def5df03e6e4ebdfbff3059b3484da Fri May 12 10:29:07 2023 -0700

adding one per user request GCA_018150745.1_ASM1815074v1 Drosophila_sucinea refs #29545
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 1, context: html, text, full: html, text

e4f8c5da0ae09be898aa97068847f92f1f54042f Fri May 12 22:38:14 2023 -0700

adding three Dengue virus per user request refs #29545
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 4, context: html, text, full: html, text