File Changes for hiram

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v448_preview to v448_preview2 (2023-05-01 to 2023-05-08) v448

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src/hg/htdocs/goldenPath/help/api.html
- lines changed 15, context: html, text, full: html, text
  4de18188ae5bb1336c3f49ad155358ee8f94db00 Wed May 3 10:20:58 2023 -0700
  adding new endpoint /list/files definitions and examples refs #23589
src/hg/hubApi/list.c
- lines changed 12, context: html, text, full: html, text
  c11b5a4152074f716254867f3de4fd020e602c26 Mon May 1 13:06:03 2023 -0700
  handling errors from failed rsync command refs #23589
- lines changed 1, context: html, text, full: html, text
  dd5c3865981aea2bd1e395a18c38d75a6585b790 Wed May 3 10:15:26 2023 -0700
  eliminate extraneous trailing slash on the genArkUrl refs #23589
src/hg/hubApi/tests/expected/err51.gz
- lines changed 0, context: html, text, full: html, text
  d3e5b46dce2bbb50ec754d4c5ae8c20978fba191 Mon May 1 13:04:57 2023 -0700
  error tests for the /list/files/ function refs #23589
src/hg/hubApi/tests/expected/err52.gz
- lines changed 0, context: html, text, full: html, text
  d3e5b46dce2bbb50ec754d4c5ae8c20978fba191 Mon May 1 13:04:57 2023 -0700
  error tests for the /list/files/ function refs #23589
src/hg/hubApi/tests/expected/err53.gz
- lines changed 0, context: html, text, full: html, text
  d3e5b46dce2bbb50ec754d4c5ae8c20978fba191 Mon May 1 13:04:57 2023 -0700
  error tests for the /list/files/ function refs #23589
src/hg/hubApi/tests/expected/list22.gz
- lines changed 0, context: html, text, full: html, text
  156d4c6ffb3166b462f0780475c8d84dbf049213 Mon May 1 10:36:32 2023 -0700
  can not use dateTime in list files comparison that may change refs #23589
src/hg/hubApi/tests/expected/list23.gz
- lines changed 0, context: html, text, full: html, text
  156d4c6ffb3166b462f0780475c8d84dbf049213 Mon May 1 10:36:32 2023 -0700
  can not use dateTime in list files comparison that may change refs #23589
- lines changed 0, context: html, text, full: html, text
  b46d0bfeffb4be0931fac5e5cfc4e4a5ac9253ad Wed May 3 10:19:59 2023 -0700
  eliminate extraneous trailing slash on the genArkUrl refs #23589
src/hg/hubApi/tests/makefile
- lines changed 2, context: html, text, full: html, text
  156d4c6ffb3166b462f0780475c8d84dbf049213 Mon May 1 10:36:32 2023 -0700
  can not use dateTime in list files comparison that may change refs #23589
- lines changed 23, context: html, text, full: html, text
  d3e5b46dce2bbb50ec754d4c5ae8c20978fba191 Mon May 1 13:04:57 2023 -0700
  error tests for the /list/files/ function refs #23589
src/hg/makeDb/doc/asmHubs/chromAuthority.pl
- lines changed 2, context: html, text, full: html, text
  c06a002b9717812e29ce9d073643413e71f3fcf1 Wed May 3 23:10:40 2023 -0700
  correct buildDir and chromAlias locations refs #29545
src/hg/makeDb/doc/asmHubs/commonHtml.pm
- lines changed 8, context: html, text, full: html, text
  8ccd7b6237d9d6d6113a0c97087471874ccb0d8f Fri Apr 28 15:08:23 2023 -0700
  add the CCGP to the index listing table refs #30508
- lines changed 15, context: html, text, full: html, text
  d80214c2c09b31f36020e9fd54e9c598c9496e4f Thu May 4 11:16:54 2023 -0700
  separate section in the bottom page index table to indicate subsets refs #29545
src/hg/makeDb/doc/asmHubs/commonNames.pl
- lines changed 36, context: html, text, full: html, text
  e2308c5c79c89d179d3b983f1413d52c4771f06c Wed May 3 23:11:44 2023 -0700
  improvements in haplotype detection nad some more generic categories recognized refs #29545
src/hg/makeDb/doc/asmHubs/master.run.list
- lines changed 1, context: html, text, full: html, text
  f3db002db8f34a63096bb10de1abd5486f0d1d3b Mon May 1 23:08:35 2023 -0700
  adding GCA_024217435.4_RoL_Ssco_1.2 per user request refs #29545
- lines changed 57, context: html, text, full: html, text
  8477e5cb58b2aa75f71ab903f97638b7f9e5130e Wed May 3 12:41:20 2023 -0700
  adding 58 for an update refs #29545
- lines changed 1, context: html, text, full: html, text
  9b03e9371988b026313c2b9eb5751dbf606b2a25 Thu May 4 10:41:54 2023 -0700
  one more for RefSeq update refs #29545
src/hg/makeDb/doc/asmHubs/trackData.pl
- lines changed 15, context: html, text, full: html, text
  13eb4b7b261fe9065ec6b1ff0f893148bd8ddb6b Wed May 3 23:09:36 2023 -0700
  allow ebiGene to become ensGene for HPRC assemblies refs #29545
src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
- lines changed 10, context: html, text, full: html, text
  2f3415eee771eb334b13c7220fe7d23571e40b22 Wed May 3 17:08:08 2023 -0700
  catching up RefSeq assemblies refs #29545
- lines changed 1, context: html, text, full: html, text
  da680e5e58b713188d24447cab8fad600f29ad12 Thu May 4 10:56:00 2023 -0700
  one more RefSeq for update refs #29545
src/hg/makeDb/doc/ccgpAsmHub/ccgp.orderList.tsv
- lines changed 10, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
- lines changed 2, context: html, text, full: html, text
  f3db002db8f34a63096bb10de1abd5486f0d1d3b Mon May 1 23:08:35 2023 -0700
  adding GCA_024217435.4_RoL_Ssco_1.2 per user request refs #29545
- lines changed 17, context: html, text, full: html, text
  2f3415eee771eb334b13c7220fe7d23571e40b22 Wed May 3 17:08:08 2023 -0700
  catching up RefSeq assemblies refs #29545
src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
- lines changed 14, context: html, text, full: html, text
  2f3415eee771eb334b13c7220fe7d23571e40b22 Wed May 3 17:08:08 2023 -0700
  catching up RefSeq assemblies refs #29545
src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
- lines changed 20, context: html, text, full: html, text
  4ca55974c606b06a6126be29700027715435ae8d Wed May 3 23:07:36 2023 -0700
  update RefSeq assemblies moved some to legacy refs #29545
src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
- lines changed 23, context: html, text, full: html, text
  2f3415eee771eb334b13c7220fe7d23571e40b22 Wed May 3 17:08:08 2023 -0700
  catching up RefSeq assemblies refs #29545
- lines changed 4, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
- lines changed 19, context: html, text, full: html, text
  2f3415eee771eb334b13c7220fe7d23571e40b22 Wed May 3 17:08:08 2023 -0700
  catching up RefSeq assemblies refs #29545
- lines changed 42, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
- lines changed 8, context: html, text, full: html, text
  2f3415eee771eb334b13c7220fe7d23571e40b22 Wed May 3 17:08:08 2023 -0700
  catching up RefSeq assemblies refs #29545
src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
- lines changed 9, context: html, text, full: html, text
  2f3415eee771eb334b13c7220fe7d23571e40b22 Wed May 3 17:08:08 2023 -0700
  catching up RefSeq assemblies refs #29545
- lines changed 6, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
- lines changed 4, context: html, text, full: html, text
  2f3415eee771eb334b13c7220fe7d23571e40b22 Wed May 3 17:08:08 2023 -0700
  catching up RefSeq assemblies refs #29545
src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
- lines changed 10, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv
- lines changed 22, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv
- lines changed 10, context: html, text, full: html, text
  64bc32d8e4784ec95010301065cf0a6d8392b5e6 Thu May 4 12:23:03 2023 -0700
  catching up 11 assemblies for VGP refs #29545
- lines changed 21, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt
- lines changed 10, context: html, text, full: html, text
  64bc32d8e4784ec95010301065cf0a6d8392b5e6 Thu May 4 12:23:03 2023 -0700
  catching up 11 assemblies for VGP refs #29545
src/hg/makeDb/doc/vgpAsmHub/vgp.trio.orderList.tsv
- lines changed 11, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/makeDb/doc/vgpAsmHub/vgp.userTracks.tsv
- lines changed 1, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/makeDb/doc/zoonomiaAsmHub/zoonomia.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  eaf1629823204ee851feaef01c34e14b8cc6b821 Thu May 4 13:40:40 2023 -0700
  coordinating common names refs #29545
src/hg/utils/automation/asmHubEbiGene.pl
- lines changed 138, context: html, text, full: html, text
  f713fa48a499ca9d09a7b59e36e3c438b29216ed Tue May 2 13:32:07 2023 -0700
  update ebiGene for HPRC assemblies and now with html description page refs #30508
src/hg/utils/automation/asmHubTrackDb.sh
- lines changed 19, context: html, text, full: html, text
  f713fa48a499ca9d09a7b59e36e3c438b29216ed Tue May 2 13:32:07 2023 -0700
  update ebiGene for HPRC assemblies and now with html description page refs #30508

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